CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus, cytosol

Predictor Summary:

nucleus 2
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX70811
CDX74700
CDX92658
CDY03412
CDY11039
CDY18962
CDY27400
CDY30379
CDY34317
CDY37020
CDY51233
CDY53659
CDY55504
CDY56346

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G74500.1	CDY30379	AT2G43060.1	21798944
AT1G74500.1	CDY53659	AT2G43060.1	21798944
AT1G74500.1	CDY55504	AT2G43060.1	21798944
AT1G74500.1	CDY56346	AT2G43060.1	21798944
AT1G74500.1	CDX74700	AT2G44950.1	21798944
AT1G74500.1	CDY18962	AT2G44950.1	21798944
AT1G74500.1	CDY27400	AT2G44950.1	21798944
AT1G74500.1	CDY37020	AT2G44950.1	21798944
AT1G74500.1	CDX70811	AT4G24840.1	21798944
AT1G74500.1	CDX92658	AT4G24840.1	21798944
AT1G74500.1	CDY03412	AT4G24840.1	21798944
AT1G74500.1	CDY11039	AT4G24840.1	21798944
AT1G74500.1	CDY34317	AT4G24840.1	21798944
AT1G74500.1	CDY51233	AT4G24840.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra008154.1-P	Field mustard	nucleus	98.86	93.55
AT1G74500.1	Thale cress	nucleus	96.59	91.4
CDX96550	Canola	cytosol, mitochondrion, nucleus, plastid	89.77	87.78
CDX73095	Canola	cytosol, mitochondrion, nucleus, plastid	88.64	86.67
CDX68180	Canola	cytosol, mitochondrion, nucleus, plastid	90.91	86.02
CDX85841	Canola	cytosol, mitochondrion, nucleus, plastid	90.91	86.02
CDX85840	Canola	cytosol, mitochondrion, nucleus, plastid	90.91	86.02
Solyc06g070910.2.1	Tomato	nucleus	80.68	77.17
CDY46428	Canola	nucleus	75.0	70.21
CDY16207	Canola	nucleus	75.0	69.47
CDY40269	Canola	nucleus	73.86	69.15
CDY28427	Canola	nucleus	72.73	68.09
CDY36934	Canola	nucleus	70.45	66.67
CDY24160	Canola	nucleus	69.32	65.59
CDX67440	Canola	mitochondrion	65.91	63.04
CDY65320	Canola	mitochondrion	65.91	63.04
CDY63469	Canola	nucleus	65.91	62.37
CDY20013	Canola	cytosol, mitochondrion, nucleus, plastid	64.77	61.96
CDX86409	Canola	cytosol, mitochondrion, nucleus, plastid	64.77	61.96
CDY70014	Canola	cytosol, mitochondrion, nucleus, plastid	64.77	61.96
CDY04040	Canola	cytosol, mitochondrion, nucleus, plastid	63.64	60.87
CDY00110	Canola	cytosol, mitochondrion, nucleus, plastid	63.64	60.87
CDX91006	Canola	mitochondrion	60.23	56.99
CDY68961	Canola	mitochondrion	60.23	56.99
CDX85562	Canola	mitochondrion	60.23	56.99
CDX69545	Canola	mitochondrion, plastid	59.09	55.32
CDX85055	Canola	mitochondrion, plastid	57.95	54.26
CDX78615	Canola	mitochondrion	56.82	53.19

Protein Annotations

EnsemblPlants:CDY69564	EnsemblPlantsGene:GSBRNA2T00088861001	Gene3D:4.10.280.10	GO:A0A078JRV6	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	InterPro:bHLH_dom
ncoils:Coil	PANTHER:PTHR12565	PANTHER:PTHR12565:SF172	PFAM:PF00010	PFscan:PS50888	ProteinID:CDY69564
ProteinID:CDY69564.1	SUPFAM:SSF47459	UniParc:UPI0004EF26E0	UniProt:A0A078JRV6	MapMan:15.5.32	:

Description

BnaAnng30830DBnaAnng30830D protein (Fragment) [Source:UniProtKB/TrEMBL;Acc:A0A078JRV6]

Coordinates

chrLK039724:-:3635..3990

Molecular Weight (calculated)

9974.7 Da

IEP (calculated)

6.518

GRAVY (calculated)

-0.611

Length

88 amino acids

Sequence
(BLAST)

1: SRSRQSSGTT RISEDQINDL VIKLQQLLPE LRDSHRSDKV SAARVLQDTC NYIRNLHREV DDLSERLSEL LANSDTAQAA LIRSLLTQ

Best Arabidopsis Sequence Match ( AT1G74500.1 )
(BLAST)

1: MSGRRSRSRQ SSGTSRISED QINDLIIKLQ QLLPELRDSR RSDKVSAARV LQDTCNYIRN LHREVDDLSE RLSELLANSD TAQAALIRSL LTQ

Arabidopsis Description

PRE3Transcription factor PRE3 [Source:UniProtKB/Swiss-Prot;Acc:Q9CA64]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.