Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra004879.1-P | Field mustard | nucleus | 99.21 | 96.68 |
| CDY18962 | Canola | nucleus | 93.08 | 93.93 |
| CDY37020 | Canola | nucleus | 86.38 | 86.77 |
| AT2G44950.1 | Thale cress | nucleus | 86.04 | 86.33 |
| CDY27400 | Canola | nucleus | 85.47 | 86.25 |
| VIT_15s0021g02140.t01 | Wine grape | nucleus | 54.48 | 54.67 |
| KRH30315 | Soybean | nucleus | 50.06 | 50.17 |
| Solyc11g013370.1.1 | Tomato | nucleus | 48.13 | 50.06 |
| GSMUA_Achr4P26970_001 | Banana | nucleus | 21.68 | 50.0 |
| KRH75261 | Soybean | nucleus | 49.94 | 50.0 |
| GSMUA_Achr1P01610_001 | Banana | nucleus | 43.47 | 43.47 |
| HORVU0Hr1G018210.6 | Barley | nucleus | 41.32 | 41.7 |
| Os04t0550400-01 | Rice | nucleus | 41.54 | 41.4 |
| TraesCS3B01G401200.2 | Wheat | nucleus | 40.52 | 41.03 |
| TraesCS3D01G362300.2 | Wheat | nucleus | 40.52 | 41.03 |
| TraesCS6B01G274100.2 | Wheat | nucleus | 40.64 | 40.87 |
| TraesCS6D01G233000.5 | Wheat | nucleus | 40.52 | 40.75 |
| TraesCS6A01G251200.2 | Wheat | nucleus | 40.52 | 40.75 |
| TraesCS3A01G369300.2 | Wheat | nucleus | 40.07 | 40.57 |
| GSMUA_Achr4P26960_001 | Banana | nucleus | 22.7 | 39.53 |
| EER88892 | Sorghum | cytosol | 38.02 | 39.37 |
| Zm00001d014640_P035 | Maize | cytosol | 37.8 | 38.72 |
| Zm00001d036507_P003 | Maize | cytosol | 35.87 | 36.28 |
| CDY02453 | Canola | nucleus | 28.6 | 28.57 |
| CDY10575 | Canola | nucleus | 28.49 | 28.39 |
| CDY65754 | Canola | cytosol | 4.2 | 21.39 |
Protein Annotations
| MapMan:19.2.2.1.5.3.2 | Gene3D:3.30.40.10 | GO:A0A078CD22 | EnsemblPlants:CDX74700 | ProteinID:CDX74700 | ProteinID:CDX74700.1 |
| ncoils:Coil | InterPro:E3_ubiquit_lig_Bre1 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004842 | GO:GO:0006464 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | GO:GO:0010390 | GO:GO:0016043 | GO:GO:0016740 |
| GO:GO:0019538 | EnsemblPlantsGene:GSBRNA2T00116659001 | InterPro:IPR001841 | InterPro:IPR013083 | PFAM:PF13920 | ScanProsite:PS00518 |
| PFscan:PS50089 | PANTHER:PTHR23163 | PANTHER:PTHR23163:SF3 | SMART:SM00184 | SUPFAM:SSF57850 | UniParc:UPI0004EF144C |
| InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | InterPro:Znf_RING_CS | SEG:seg | : | : |
Description
BnaA05g04460D
Coordinates
chrLK031802:-:237114..241914
Molecular Weight (calculated)
99793.2 Da
IEP (calculated)
7.722
GRAVY (calculated)
-0.689
Length
881 amino acids
Sequence
(BLAST)
(BLAST)
001: MTSTGEPDRK KRHFSSISPT EAAAAVKKQP FFWPSSEDKL DTAVLQFQNL KLSQKLEAQQ VECSILEDRL SQIKDKQLPY SSSLKTVHKS WDKLTDAVES
101: CSVRVSGSSS GGHRSVNKED GSSPDIKDDF INRLLETGAT ESSSSSNICS NGMEDGRGNN TSTQVTQTLH NLVAATNDIR CLKDELYPTV LKTGLDKDSC
201: GQQLALNELE SEVKSFRVAL DDVLVKFKSL SRELQSYRDA DARVRADLKR IRGELEDEVV ELQQCNGDLS ALRAERDATA GAFFPVLSPG NKLASSDKTR
301: DKQRDLQDME GVLKELTVLA SSRLQELKEL HKERTKILER TSILQNKSKS VRGISSSQAC LSLKDQLRRS KEAVFKYMAL LEKLQVEKDS LFWKERELNI
401: KNELVDVSRR TSAVADSRMA SLDVEIQKQH DEKTRIKTRL GNISKERGRK ELFADTKALV SSFPGEMSSM RSQLSSYKET AGGIHSLRAD VQSLSGVLCR
501: KTKECEALHL RSAGYASQLR DLNATVRDLK NSHEELQLFL DMFKRESTDP RDIAEAKEQE YRAWAHVESL KSSLDEQNLE LRVKAANEAE AVSQQMLAAA
601: EAEIADLRQR MDDCKRDVAK HSDVLKSKNE EHGTYLSEIQ TIGSAYEDIV PQNQQLLLQV TERDDYNIKL YLEGITSRQM QDALLIDKYI MDKDIQQASA
701: SASFLSKRSL RIEDQMRLCT DQYQRLAEDR YQKSITLENL QKKRADVVNG LEQARSKLEE SHSRVEKSRV DYGALELELE TERFNRRRIE EDMETAKKKV
801: SRLRSLIEGS SATQKLRQEL SEFKEILKCK ACNDRSKEVV ITKCFHLFCN PCVQKIIGTR QRKCPTCSAS FGPNDIKPIY I
101: CSVRVSGSSS GGHRSVNKED GSSPDIKDDF INRLLETGAT ESSSSSNICS NGMEDGRGNN TSTQVTQTLH NLVAATNDIR CLKDELYPTV LKTGLDKDSC
201: GQQLALNELE SEVKSFRVAL DDVLVKFKSL SRELQSYRDA DARVRADLKR IRGELEDEVV ELQQCNGDLS ALRAERDATA GAFFPVLSPG NKLASSDKTR
301: DKQRDLQDME GVLKELTVLA SSRLQELKEL HKERTKILER TSILQNKSKS VRGISSSQAC LSLKDQLRRS KEAVFKYMAL LEKLQVEKDS LFWKERELNI
401: KNELVDVSRR TSAVADSRMA SLDVEIQKQH DEKTRIKTRL GNISKERGRK ELFADTKALV SSFPGEMSSM RSQLSSYKET AGGIHSLRAD VQSLSGVLCR
501: KTKECEALHL RSAGYASQLR DLNATVRDLK NSHEELQLFL DMFKRESTDP RDIAEAKEQE YRAWAHVESL KSSLDEQNLE LRVKAANEAE AVSQQMLAAA
601: EAEIADLRQR MDDCKRDVAK HSDVLKSKNE EHGTYLSEIQ TIGSAYEDIV PQNQQLLLQV TERDDYNIKL YLEGITSRQM QDALLIDKYI MDKDIQQASA
701: SASFLSKRSL RIEDQMRLCT DQYQRLAEDR YQKSITLENL QKKRADVVNG LEQARSKLEE SHSRVEKSRV DYGALELELE TERFNRRRIE EDMETAKKKV
801: SRLRSLIEGS SATQKLRQEL SEFKEILKCK ACNDRSKEVV ITKCFHLFCN PCVQKIIGTR QRKCPTCSAS FGPNDIKPIY I
001: MASTGEPDRK RRHFSSISPS EAAAAVKKQP FFWPSSEDKL DTAVLQFQNL KLSQKLEAQQ VECSILEDKL SQIKEKQLPY NSSLKTVHKS WEKLTASVES
101: CSVRVSDSSS GAHRFVNKED GSSPAVKNDF INRLLETGAT ESSSSNICSN QMEENGVNTS SQMTQTLYNL VAATEDLRCL KDELYPTVLR TNLGKDLCGQ
201: LALSELESEI KSFRGDLDDV LVKFKSLSRE LQSHRDADAK VRVDLKRIRG ELEDEVVELQ QCNGDLSALR AERDATAGAF FPVLSLGNKL ATSDRERDKQ
301: RDLQDMETVL KELTVLASGR LQQLKNLHEE RTKMLGKMSN LQNKSKSVRC ISSSQACLSL KDQLEKSKEA VFQYMALLEK LQVEKDSIVW KEREINIKNE
401: LGDVSRKTSA VTDSRMASLD SEIQKQLDEK MRIKTRLGNI SRERGRKEIF ADMKALISSF PEEMSSMRSQ LNNYKETAGG IHSLRADVQS LSGVLCRKTK
501: EYEALQLRSA DYASQLGDLN ATVCDLKNSH EELKLFLDMY KRESTDARDI AEAKEQEYRA WAHVQSLKSS LDEQNLELRV KAANEAEAVS QQMLAAAEAE
601: IADLRQKMDD CKRDVAKHSD ILKSKHEEHG TYLSEIQTIG SAYEDIVPQN QQLLLQVTER DDYNIKLFLE GITSRQMQDT LLIDKYIMDK DIQQGSAYAS
701: FLSKKSSRIE DQLRFCTDQF QKLAEDKYQK SVSLENLQKK RADIGNGLEQ ARSRLEESHS KVEQSRLDYG ALELELEIER FNRRRIEEEM EIAKKKVSRL
801: RSLIEGSSAI QKLRQELSEF KEILKCKACN DRPKEVVITK CYHLFCNPCV QKLTGTRQKK CPTCSASFGP NDIKPIYI
101: CSVRVSDSSS GAHRFVNKED GSSPAVKNDF INRLLETGAT ESSSSNICSN QMEENGVNTS SQMTQTLYNL VAATEDLRCL KDELYPTVLR TNLGKDLCGQ
201: LALSELESEI KSFRGDLDDV LVKFKSLSRE LQSHRDADAK VRVDLKRIRG ELEDEVVELQ QCNGDLSALR AERDATAGAF FPVLSLGNKL ATSDRERDKQ
301: RDLQDMETVL KELTVLASGR LQQLKNLHEE RTKMLGKMSN LQNKSKSVRC ISSSQACLSL KDQLEKSKEA VFQYMALLEK LQVEKDSIVW KEREINIKNE
401: LGDVSRKTSA VTDSRMASLD SEIQKQLDEK MRIKTRLGNI SRERGRKEIF ADMKALISSF PEEMSSMRSQ LNNYKETAGG IHSLRADVQS LSGVLCRKTK
501: EYEALQLRSA DYASQLGDLN ATVCDLKNSH EELKLFLDMY KRESTDARDI AEAKEQEYRA WAHVQSLKSS LDEQNLELRV KAANEAEAVS QQMLAAAEAE
601: IADLRQKMDD CKRDVAKHSD ILKSKHEEHG TYLSEIQTIG SAYEDIVPQN QQLLLQVTER DDYNIKLFLE GITSRQMQDT LLIDKYIMDK DIQQGSAYAS
701: FLSKKSSRIE DQLRFCTDQF QKLAEDKYQK SVSLENLQKK RADIGNGLEQ ARSRLEESHS KVEQSRLDYG ALELELEIER FNRRRIEEEM EIAKKKVSRL
801: RSLIEGSSAI QKLRQELSEF KEILKCKACN DRPKEVVITK CYHLFCNPCV QKLTGTRQKK CPTCSASFGP NDIKPIYI
Arabidopsis Description
HUB1E3 ubiquitin-protein ligase BRE1-like 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8RXD6]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.