CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX70438
CDX78461
CDX91181
CDY67814

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G32980.1	CDX70438	AT5G11980.1	21798944
AT2G32980.1	CDX78461	AT5G11980.1	21798944
AT2G32980.1	CDX91181	AT5G11980.1	21798944
AT2G32980.1	CDY67814	AT5G11980.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra005537.1-P	Field mustard	cytosol	78.05	89.96
CDY19427	Canola	cytosol	88.5	89.12
CDX84714	Canola	nucleus	87.11	84.46
AT2G32980.1	Thale cress	nucleus	85.02	82.43
CDX79491	Canola	cytosol	87.46	79.68
VIT_12s0059g01290.t01	Wine grape	nucleus	75.96	72.67
Solyc08g013990.2.1	Tomato	mitochondrion, nucleus	72.82	72.32
KRG91378	Soybean	cytosol	67.94	71.43
KRH35436	Soybean	cytosol	67.25	70.7
TraesCS7A01G464500.1	Wheat	cytosol	57.84	63.85
Os08t0204800-01	Rice	cytosol	58.54	63.64
TraesCS7D01G452100.1	Wheat	cytosol	58.19	63.26
TraesCS7B01G365000.1	Wheat	cytosol	57.84	63.12
HORVU7Hr1G106500.1	Barley	nucleus	57.84	62.88
TraesCS7A01G464000.1	Wheat	cytosol	57.84	62.88
TraesCS7B01G364500.1	Wheat	cytosol	57.84	62.88
GSMUA_Achr3P29180_001	Banana	nucleus	62.02	62.68
HORVU7Hr1G106630.1	Barley	cytosol	57.49	62.5
TraesCS7D01G451600.1	Wheat	cytosol	57.49	62.5
EES14698	Sorghum	cytosol	57.49	62.03
Zm00001d024292_P002	Maize	cytosol	57.49	60.22
GSMUA_Achr5P14990_001	Banana	plasma membrane	49.48	52.79

Protein Annotations

EnsemblPlants:CDY17122	EnsemblPlantsGene:GSBRNA2T00095177001	GO:A0A078FWM0	GO:GO:0007049	GO:GO:0008150	GO:GO:0009987
GO:GO:0016043	GO:GO:0031023	GO:GO:0051225	InterPro:HAUS2	PANTHER:PTHR16039	PFAM:PF15003
ProteinID:CDY17122	ProteinID:CDY17122.1	UniParc:UPI0004EE66E9	UniProt:A0A078FWM0	MapMan:20.1.2.2.2	:

Description

BnaA05g10660DBnaA05g10660D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FWM0]

Coordinates

chrLK032071:-:22677..25964

Molecular Weight (calculated)

31738.7 Da

IEP (calculated)

6.531

GRAVY (calculated)

-0.313

Length

287 amino acids

Sequence
(BLAST)

001: MSLGSDSTWV GKKPIRRIGG LSDALSIASD LGYAVAPPPS QYLSTLDIAL CSIELQTLAS LNGERGDDLI RVLRELSSVQ RKIADFQVEL QGRKDDKNVA
101: HLTHVCEMQK KIDTLSRITQ ILKDVIQNKD RIIARLQQPY SLDCIPVEAE YQKQFSELLM RAASDYGALT ASVSDFQWSQ NFKEPPSVWG EMLRPIPVAL
201: ASCTRFFEAM SAMRESFATL QDLRVGNSAA SLPTTPSQRN SDCVTPSQGV TGSSFDDLAV QTTRREAENV QADRRLSWPP SVKKSNV

Best Arabidopsis Sequence Match ( AT2G32980.1 )
(BLAST)

001: MSMGGDTTWV GKKPIRRIGG LSDALSIASD LGFAVAPPPS QEELQSFASS NGERGDDLIR VLRELSVVQR KIADLQVELQ GRKDDKNVAH LTHVGEMQKK
101: IETLSRITQI LKDVIQNKDR IIARLQQPYS LDCIPVEAEY QKQFSELLMK AASDYGALTA SVSDFQWSQN FKEPPSVWGE MLRPIPVALA SCTRFFEAMS
201: AMRESFATLQ ELRVGNSAVS LPTTPGGNEM THRDSDCVTP PQGRIESSFD DLAVHKTRRQ NNDQNEEEEE EEEEEDGNNN GNRRLSWPPS VKKSSV

Arabidopsis Description

AUG2AUGMIN subunit 2 [Source:UniProtKB/Swiss-Prot;Acc:O48767]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.