Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 3
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Solyc01g087650.2.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G32980.1 | Solyc01g087650.2.1 | AT5G11980.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_12s0059g01290.t01 | Wine grape | nucleus | 80.97 | 78.0 |
| KRG91378 | Soybean | cytosol | 72.32 | 76.56 |
| KRH35436 | Soybean | cytosol | 71.63 | 75.82 |
| Bra005537.1-P | Field mustard | cytosol | 63.67 | 73.9 |
| Bra022916.1-P | Field mustard | nucleus | 74.74 | 73.72 |
| CDY19427 | Canola | cytosol | 72.66 | 73.68 |
| CDX84714 | Canola | nucleus | 75.43 | 73.65 |
| AT2G32980.1 | Thale cress | nucleus | 74.74 | 72.97 |
| CDY17122 | Canola | cytosol | 72.32 | 72.82 |
| CDX79491 | Canola | cytosol | 75.43 | 69.21 |
| Os08t0204800-01 | Rice | cytosol | 62.28 | 68.18 |
| TraesCS7A01G464500.1 | Wheat | cytosol | 60.9 | 67.69 |
| HORVU7Hr1G106630.1 | Barley | cytosol | 61.25 | 67.05 |
| TraesCS7A01G464000.1 | Wheat | cytosol | 61.25 | 67.05 |
| TraesCS7B01G364500.1 | Wheat | cytosol | 60.9 | 66.67 |
| TraesCS7D01G451600.1 | Wheat | cytosol | 60.9 | 66.67 |
| TraesCS7D01G452100.1 | Wheat | cytosol | 60.9 | 66.67 |
| EES14698 | Sorghum | cytosol | 61.25 | 66.54 |
| TraesCS7B01G365000.1 | Wheat | cytosol | 60.55 | 66.54 |
| HORVU7Hr1G106500.1 | Barley | nucleus | 60.55 | 66.29 |
| GSMUA_Achr3P29180_001 | Banana | nucleus | 63.67 | 64.79 |
| Zm00001d024292_P002 | Maize | cytosol | 60.55 | 63.87 |
| GSMUA_Achr5P14990_001 | Banana | plasma membrane | 47.06 | 50.56 |
Protein Annotations
| EnsemblPlants:Solyc08g013990.2.1 | EnsemblPlantsGene:Solyc08g013990.2 | GO:GO:0000278 | GO:GO:0000911 | GO:GO:0007020 | GO:GO:0007049 |
| GO:GO:0008150 | GO:GO:0009987 | GO:GO:0016043 | GO:GO:0031023 | GO:GO:0051225 | InterPro:HAUS2 |
| ncoils:Coil | PANTHER:PTHR16039 | PFAM:PF15003 | UniParc:UPI000276B096 | UniProt:K4CJ33 | MapMan:20.1.2.2.2 |
Description
No Description!
Coordinates
chr8:-:3497848..3508823
Molecular Weight (calculated)
32166.0 Da
IEP (calculated)
5.091
GRAVY (calculated)
-0.523
Length
289 amino acids
Sequence
(BLAST)
(BLAST)
001: MGSDSTWVGR KPMRRLGGMS DALSIAAELG FSVPPPPSQE EIQNLSTTTG ENGDDLIRVL KELTAVQRKI ADLQVELQGR KEDKNVAHLT HVSEMEKKIE
101: TLQRITTILK DVIQNKDRII ARLQQPYSLD CIPVEAEYQK QFSELLMRAA SDYGALTASV TDFQWSQNFK EPPTVWGEML RPIPVALASS TRFFEAMSAM
201: RESIATLHAL RVGHSSSLST TPSNDPSQTT LGDTDCVTPP PWRTESSFDD LAVGNLRRQE SEPQEGSEIE KGDSMSHRRL SWPPSVKNI
101: TLQRITTILK DVIQNKDRII ARLQQPYSLD CIPVEAEYQK QFSELLMRAA SDYGALTASV TDFQWSQNFK EPPTVWGEML RPIPVALASS TRFFEAMSAM
201: RESIATLHAL RVGHSSSLST TPSNDPSQTT LGDTDCVTPP PWRTESSFDD LAVGNLRRQE SEPQEGSEIE KGDSMSHRRL SWPPSVKNI
001: MSMGGDTTWV GKKPIRRIGG LSDALSIASD LGFAVAPPPS QEELQSFASS NGERGDDLIR VLRELSVVQR KIADLQVELQ GRKDDKNVAH LTHVGEMQKK
101: IETLSRITQI LKDVIQNKDR IIARLQQPYS LDCIPVEAEY QKQFSELLMK AASDYGALTA SVSDFQWSQN FKEPPSVWGE MLRPIPVALA SCTRFFEAMS
201: AMRESFATLQ ELRVGNSAVS LPTTPGGNEM THRDSDCVTP PQGRIESSFD DLAVHKTRRQ NNDQNEEEEE EEEEEDGNNN GNRRLSWPPS VKKSSV
101: IETLSRITQI LKDVIQNKDR IIARLQQPYS LDCIPVEAEY QKQFSELLMK AASDYGALTA SVSDFQWSQN FKEPPSVWGE MLRPIPVALA SCTRFFEAMS
201: AMRESFATLQ ELRVGNSAVS LPTTPGGNEM THRDSDCVTP PQGRIESSFD DLAVHKTRRQ NNDQNEEEEE EEEEEDGNNN GNRRLSWPPS VKKSSV
Arabidopsis Description
AUG2AUGMIN subunit 2 [Source:UniProtKB/Swiss-Prot;Acc:O48767]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.