CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
plastid 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH07953
KRH69706

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G32980.1	KRH07953	AT5G11980.1	21798944
AT2G32980.1	KRH69706	AT5G11980.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH35436	Soybean	cytosol	97.8	97.8
VIT_12s0059g01290.t01	Wine grape	nucleus	80.95	73.67
Solyc08g013990.2.1	Tomato	mitochondrion, nucleus	76.56	72.32
AT2G32980.1	Thale cress	nucleus	75.09	69.26
CDY19427	Canola	cytosol	72.16	69.12
Bra005537.1-P	Field mustard	cytosol	62.27	68.27
CDX84714	Canola	nucleus	73.99	68.24
CDY17122	Canola	cytosol	71.43	67.94
Bra022916.1-P	Field mustard	nucleus	72.89	67.92
TraesCS7A01G464500.1	Wheat	cytosol	63.0	66.15
Os08t0204800-01	Rice	cytosol	63.74	65.91
HORVU7Hr1G106630.1	Barley	cytosol	63.37	65.53
TraesCS7A01G464000.1	Wheat	cytosol	63.0	65.15
TraesCS7D01G452100.1	Wheat	cytosol	63.0	65.15
TraesCS7B01G365000.1	Wheat	cytosol	62.64	65.02
TraesCS7B01G364500.1	Wheat	cytosol	62.64	64.77
TraesCS7D01G451600.1	Wheat	cytosol	62.64	64.77
EES14698	Sorghum	cytosol	63.0	64.66
CDX79491	Canola	cytosol	74.36	64.44
HORVU7Hr1G106500.1	Barley	nucleus	61.9	64.02
Zm00001d024292_P002	Maize	cytosol	62.64	62.41
GSMUA_Achr3P29180_001	Banana	nucleus	63.74	61.27
GSMUA_Achr5P14990_001	Banana	plasma membrane	50.55	51.3

Protein Annotations

EntrezGene:100816472	MapMan:20.1.2.2.2	EMBL:ACUP02012679	ncoils:Coil	EnsemblPlantsGene:GLYMA_20G151100	GO:GO:0007049
GO:GO:0008150	GO:GO:0009987	GO:GO:0016043	GO:GO:0031023	GO:GO:0051225	InterPro:HAUS2
UniProt:I1NGL0	EnsemblPlants:KRG91378	ProteinID:KRG91378	ProteinID:KRG91378.1	ProteinID:KRG91379.1	PFAM:PF15003
PANTHER:PTHR16039	UniParc:UPI000233DE0D	:	:	:	:

Description

hypothetical protein

Coordinates

chr20:-:38974302..38978722

Molecular Weight (calculated)

30421.2 Da

IEP (calculated)

6.154

GRAVY (calculated)

-0.490

Length

273 amino acids

Sequence
(BLAST)

001: MSMASESSWV GRKPVKRIGG MSDALSIAAD LGFSLSPPPS QEGLQNSSPT TGEKGEDLIR VLRELTTVQR KIADLQVELQ GRKDDKNVAH LTHVSEMEKK
101: IETLARITTI LKDVIQNKDR IIARLQQPYS LDCIPVEAEY QKQFSELLMK AASDYGALTA SVADFQWSQN FKEPPSVWGE MLRPIPVALA SCTRFFEAMS
201: ATRESFASLQ KLRVGHFDSP LPRTPAGDPS QRVPGVSDCL TPPPWKTETN FDDLGIRNQR RQHLDQQVED VNS

Best Arabidopsis Sequence Match ( AT2G32980.1 )
(BLAST)

001: MSMGGDTTWV GKKPIRRIGG LSDALSIASD LGFAVAPPPS QEELQSFASS NGERGDDLIR VLRELSVVQR KIADLQVELQ GRKDDKNVAH LTHVGEMQKK
101: IETLSRITQI LKDVIQNKDR IIARLQQPYS LDCIPVEAEY QKQFSELLMK AASDYGALTA SVSDFQWSQN FKEPPSVWGE MLRPIPVALA SCTRFFEAMS
201: AMRESFATLQ ELRVGNSAVS LPTTPGGNEM THRDSDCVTP PQGRIESSFD DLAVHKTRRQ NNDQNEEEEE EEEEEDGNNN GNRRLSWPPS VKKSSV

Arabidopsis Description

AUG2AUGMIN subunit 2 [Source:UniProtKB/Swiss-Prot;Acc:O48767]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.