Factsheet for GSMUA_Achr5P14990_001

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 2
endoplasmic reticulum 1
mitochondrion 1
plasma membrane 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	endoplasmic reticulum, mitochondrion, nucleus, plasma membrane
BaCelLo:	nucleus
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr3P32460_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G32980.1	GSMUA_Achr3P32460_001	AT5G11980.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr3P29180_001	Banana	nucleus	63.94	60.56
TraesCS7A01G464500.1	Wheat	cytosol	53.9	55.77
TraesCS7D01G452100.1	Wheat	cytosol	54.65	55.68
TraesCS7D01G451600.1	Wheat	cytosol	54.65	55.68
TraesCS7B01G364500.1	Wheat	cytosol	54.65	55.68
TraesCS7B01G365000.1	Wheat	cytosol	54.28	55.51
HORVU7Hr1G106500.1	Barley	nucleus	54.28	55.3
HORVU7Hr1G106630.1	Barley	cytosol	54.28	55.3
TraesCS7A01G464000.1	Wheat	cytosol	54.28	55.3
EES14698	Sorghum	cytosol	53.53	54.14
Os08t0204800-01	Rice	cytosol	52.79	53.79
Zm00001d024292_P002	Maize	cytosol	52.79	51.82
KRG91378	Soybean	cytosol	51.3	50.55
KRH35436	Soybean	cytosol	51.3	50.55
Bra005537.1-P	Field mustard	cytosol	46.47	50.2
CDY19427	Canola	cytosol	52.79	49.82
CDY17122	Canola	cytosol	52.79	49.48
VIT_12s0059g01290.t01	Wine grape	nucleus	55.02	49.33
AT2G32980.1	Thale cress	nucleus	53.53	48.65
CDX84714	Canola	nucleus	53.53	48.65
Bra022916.1-P	Field mustard	nucleus	52.79	48.46
Solyc08g013990.2.1	Tomato	mitochondrion, nucleus	50.56	47.06
CDX79491	Canola	cytosol	53.16	45.4

Protein Annotations

EnsemblPlants:GSMUA_Achr5P14990_001	EnsemblPlants:GSMUA_Achr5T14990_001	EnsemblPlantsGene:GSMUA_Achr5G14990_001	GO:GO:0005575	GO:GO:0007049	GO:GO:0008150
GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0016043	GO:GO:0031023	GO:GO:0051225
InterPro:HAUS2	PANTHER:PTHR16039	PFAM:PF15003	SEG:seg	TMHMM:TMhelix	UniParc:UPI0002954BBC
UniProt:M0SYM8	MapMan:20.1.2.2.2	:	:	:	:

Description

Whole genome shotgun sequence of line PN40024, scaffold_59.assembly12x (Fragment) [Source:GMGC_GENE;Acc:GSMUA_Achr5G14990_001]

Coordinates

chr5:+:10891038..10894874

Molecular Weight (calculated)

30581.5 Da

IEP (calculated)

8.552

GRAVY (calculated)

0.148

Length

269 amino acids

Sequence
(BLAST)

001: MSVSSDTGGA GKKLPRRLGG MAEALAIASD LGVPIPPVQL FFFILLFLLD DKNVAHLTHV SEMEKKCKSL ARITAVLKDV IQNKDWIIAR LQQPYSLDCI
101: PVEAEYQLKI LLYRNIYNQK QFSELLLKAA SDYGALTAAV ADFQWCQNFK ESPRVWGEML HPIPAVLASC TRFFEAMSAM RDSFATLQQF RVSNSSLPTT
201: PKKVELVRSA DKSSNRRRCQ FYMLQSYFME CKCSYFFIIV EACNVVNIAF IWVSLKLTIL ELSFEQLFL

Best Arabidopsis Sequence Match ( AT2G32980.1 )
(BLAST)

001: MSMGGDTTWV GKKPIRRIGG LSDALSIASD LGFAVAPPPS QEELQSFASS NGERGDDLIR VLRELSVVQR KIADLQVELQ GRKDDKNVAH LTHVGEMQKK
101: IETLSRITQI LKDVIQNKDR IIARLQQPYS LDCIPVEAEY QKQFSELLMK AASDYGALTA SVSDFQWSQN FKEPPSVWGE MLRPIPVALA SCTRFFEAMS
201: AMRESFATLQ ELRVGNSAVS LPTTPGGNEM THRDSDCVTP PQGRIESSFD DLAVHKTRRQ NNDQNEEEEE EEEEEDGNNN GNRRLSWPPS VKKSSV

Arabidopsis Description

AUG2AUGMIN subunit 2 [Source:UniProtKB/Swiss-Prot;Acc:O48767]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.