CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX70438
CDX78461
CDX91181
CDY67814

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G32980.1	CDX70438	AT5G11980.1	21798944
AT2G32980.1	CDX78461	AT5G11980.1	21798944
AT2G32980.1	CDX91181	AT5G11980.1	21798944
AT2G32980.1	CDY67814	AT5G11980.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX84714	Canola	nucleus	92.38	98.31
Bra022916.1-P	Field mustard	nucleus	91.11	97.95
AT2G32980.1	Thale cress	nucleus	82.22	87.5
CDY17122	Canola	cytosol	79.68	87.46
CDY19427	Canola	cytosol	78.73	87.02
VIT_12s0059g01290.t01	Wine grape	nucleus	73.97	77.67
Solyc08g013990.2.1	Tomato	mitochondrion, nucleus	69.21	75.43
KRG91378	Soybean	cytosol	64.44	74.36
KRH35436	Soybean	cytosol	63.81	73.63
TraesCS7A01G464500.1	Wheat	cytosol	56.19	68.08
TraesCS7B01G365000.1	Wheat	cytosol	56.51	67.68
Os08t0204800-01	Rice	cytosol	56.51	67.42
TraesCS7B01G364500.1	Wheat	cytosol	56.51	67.42
TraesCS7D01G452100.1	Wheat	cytosol	56.51	67.42
TraesCS7A01G464000.1	Wheat	cytosol	56.19	67.05
HORVU7Hr1G106630.1	Barley	cytosol	55.87	66.67
HORVU7Hr1G106500.1	Barley	nucleus	55.87	66.67
TraesCS7D01G451600.1	Wheat	cytosol	55.87	66.67
EES14698	Sorghum	cytosol	55.24	65.41
GSMUA_Achr3P29180_001	Banana	nucleus	58.73	65.14
Zm00001d024292_P002	Maize	cytosol	55.56	63.87
GSMUA_Achr5P14990_001	Banana	plasma membrane	45.4	53.16

Protein Annotations

EnsemblPlants:CDX79491	EnsemblPlantsGene:GSBRNA2T00132236001	GO:A0A078CQN9	GO:GO:0007049	GO:GO:0008150	GO:GO:0009987
GO:GO:0016043	GO:GO:0031023	GO:GO:0051225	InterPro:HAUS2	PANTHER:PTHR16039	PFAM:PF15003
ProteinID:CDX79491	ProteinID:CDX79491.1	SEG:seg	UniParc:UPI0004EE9EF2	MapMan:20.1.2.2.2	:

Description

BnaC03g18270D

Coordinates

chrLK031818:+:345860..348818

Molecular Weight (calculated)

34823.0 Da

IEP (calculated)

4.686

GRAVY (calculated)

-0.483

Length

315 amino acids

Sequence
(BLAST)

001: MSMGSDSTWV GKKPIRRIGG FSDALSIASD LGYAVAPPPS QIDLENKGFE ICSFLTELSV EELQSLASSN GEKGDDLIRV LRELSAVQRK IADFQVELQG
101: RKDDKNVAHL THVSEMQKKI ETLSRITQIL KDVIQNKDRI IARLQQPYSL DCIPVEAEYQ KQFSELLMKA ASDYGALTAS VSDFQWSQNF KEPPSVWGEM
201: LRPIPVALAS CTRFFEAMTA MRESFATLQD LRVGNSAASL PTTPGSSETP HRDSDCVTPP QGRTDLSFDD LAVQATRRQI PDQNEAEGEE DGNGNENAQL
301: DRRLSWPPSV KKSGV

Best Arabidopsis Sequence Match ( AT2G32980.1 )
(BLAST)

001: MSMGGDTTWV GKKPIRRIGG LSDALSIASD LGFAVAPPPS QEELQSFASS NGERGDDLIR VLRELSVVQR KIADLQVELQ GRKDDKNVAH LTHVGEMQKK
101: IETLSRITQI LKDVIQNKDR IIARLQQPYS LDCIPVEAEY QKQFSELLMK AASDYGALTA SVSDFQWSQN FKEPPSVWGE MLRPIPVALA SCTRFFEAMS
201: AMRESFATLQ ELRVGNSAVS LPTTPGGNEM THRDSDCVTP PQGRIESSFD DLAVHKTRRQ NNDQNEEEEE EEEEEDGNNN GNRRLSWPPS VKKSSV

Arabidopsis Description

AUG2AUGMIN subunit 2 [Source:UniProtKB/Swiss-Prot;Acc:O48767]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.