Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY67814 | Canola | cytosol | 96.13 | 96.13 |
| CDX91181 | Canola | cytosol | 96.13 | 95.96 |
| CDX78461 | Canola | cytosol | 91.74 | 93.72 |
| AT5G11980.1 | Thale cress | cytosol | 91.74 | 91.74 |
| EER92716 | Sorghum | cytosol | 64.5 | 61.89 |
| Os12t0538300-01 | Rice | cytosol | 66.26 | 61.8 |
| TraesCS5B01G101300.1 | Wheat | cytosol | 65.38 | 61.08 |
| TraesCS5D01G107800.1 | Wheat | cytosol | 65.38 | 61.08 |
| CDY17117 | Canola | extracellular | 8.96 | 60.71 |
| TraesCS5A01G095100.1 | Wheat | cytosol | 65.2 | 60.13 |
| HORVU5Hr1G025740.13 | Barley | vacuole | 65.2 | 57.43 |
| CDY04606 | Canola | cytosol | 8.26 | 47.96 |
Protein Annotations
| EnsemblPlants:CDX70438 | EnsemblPlantsGene:GSBRNA2T00140251001 | GO:A0A078C601 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0005794 | GO:GO:0017119 | InterPro:COG8 | InterPro:COG8_Metazoal_Plant | InterPro:Cullin_repeat-like_dom_sf |
| PANTHER:PTHR21311 | PFAM:PF04124 | PIRSF:PIRSF015415 | ProteinID:CDX70438 | ProteinID:CDX70438.1 | SEG:seg |
| SUPFAM:SSF74788 | UniParc:UPI0004EEFC6E | MapMan:22.6.2.8 | : | : | : |
Description
BnaC03g05220D
Coordinates
chrLK031791:-:415122..418771
Molecular Weight (calculated)
63266.1 Da
IEP (calculated)
5.032
GRAVY (calculated)
-0.094
Length
569 amino acids
Sequence
(BLAST)
(BLAST)
001: MATEVVEMSP PEATASLLSL ASASQQPYVS ELLSFTLDRL HKEPELLRVD AERIQRQMQE VAVGNYRAFI TAADALLAIR QEVSSIDKHL ESLINEVPKL
101: TSGCTEFIES AENILVKRKM NQALLANHST LLDLLEIPQL MDTCVRNGNF DEALDLEAFV SKLATMHPKL PVIQALAAEV RQTTQSLLSQ LLQKLRSNIQ
201: LPECLRIIGY LRRIGVFGEY EMRLQFLRCR EAWLTGILED LDQKNAYEYL KGMINCHRMH LFDVVNQYRA IFADDTSGSE ENYDGGLLFS WAMHQITSHL
301: KTLKVMLPKI TEGGSLSNIL DQCMYCAMGL GWVGLDFRGL LPPLFEEAVL NLFSKNMNTA VENFQLVLDS HRWVPLPSVG FPSTGFNDDS KDDVTPPSYL
401: MEHPPLAVFT NGVSAALNEL RPCAPLSLKN VIAHELIKGL QAGSDSLLRY NTTRMLRLNE SNLFLSLCRA FVEVVFPHCA TCFGRCYPGG ASIVMDAKSA
501: YEGLSRILAA SSSPEPSNKL VKTISTDATS ASENGVASQV EEKQVESPNK KEEDSHIPLQ IPETTPHES
101: TSGCTEFIES AENILVKRKM NQALLANHST LLDLLEIPQL MDTCVRNGNF DEALDLEAFV SKLATMHPKL PVIQALAAEV RQTTQSLLSQ LLQKLRSNIQ
201: LPECLRIIGY LRRIGVFGEY EMRLQFLRCR EAWLTGILED LDQKNAYEYL KGMINCHRMH LFDVVNQYRA IFADDTSGSE ENYDGGLLFS WAMHQITSHL
301: KTLKVMLPKI TEGGSLSNIL DQCMYCAMGL GWVGLDFRGL LPPLFEEAVL NLFSKNMNTA VENFQLVLDS HRWVPLPSVG FPSTGFNDDS KDDVTPPSYL
401: MEHPPLAVFT NGVSAALNEL RPCAPLSLKN VIAHELIKGL QAGSDSLLRY NTTRMLRLNE SNLFLSLCRA FVEVVFPHCA TCFGRCYPGG ASIVMDAKSA
501: YEGLSRILAA SSSPEPSNKL VKTISTDATS ASENGVASQV EEKQVESPNK KEEDSHIPLQ IPETTPHES
001: MAMEVGEMSQ PEATASLLSL ASATQQPYVS ELLSFTLDRL HKEPELLRVD AERIQRQMQE VAVGNYRAFI TAADALLAIR QEVSSIDKHL ESLIGEVPKL
101: TSGCTEFIDS AENILEKRKM NQALLANHST LLDLLEIPQL MDTCVRNGNF DEALDLEAFV SKLATLHPKL PVIQALAAEV RQTTQSLLSQ LLQKLRSNIQ
201: LPECLRIIGY LRRIGVFGEY EMRLQFLRCR EAWLTGILED LDQKNAYEYL KGMINCHRMH LFDVVNQYRA IFSDDTSGSE ENYDGGLLFS WAMHQITSHL
301: KTLKIMLPKI TEGGSLSNIL DQCMYCAMGL GGVGLDFRGL LPPLFEEAVL NLFSKNMSTA VENFQLVLDS HRWVPLPSVG FPSSGINEDS KDDVTPPSYL
401: MEHPPLAVFI NGVSSALNEL RPCAPLSLKN VVAHELIKGL QAVSDSLLRY NTTRMLRLSE SNLFLSLCRA FVEVVFPHCA TCFGRCYPGG ATIVMDAKSA
501: YEGLGRILAA SSSQEPSNKS PKVISTDTKD ASENGVASQP EEKQAENPNA KEEDNSPIPL QTPEITPES
101: TSGCTEFIDS AENILEKRKM NQALLANHST LLDLLEIPQL MDTCVRNGNF DEALDLEAFV SKLATLHPKL PVIQALAAEV RQTTQSLLSQ LLQKLRSNIQ
201: LPECLRIIGY LRRIGVFGEY EMRLQFLRCR EAWLTGILED LDQKNAYEYL KGMINCHRMH LFDVVNQYRA IFSDDTSGSE ENYDGGLLFS WAMHQITSHL
301: KTLKIMLPKI TEGGSLSNIL DQCMYCAMGL GGVGLDFRGL LPPLFEEAVL NLFSKNMSTA VENFQLVLDS HRWVPLPSVG FPSSGINEDS KDDVTPPSYL
401: MEHPPLAVFI NGVSSALNEL RPCAPLSLKN VVAHELIKGL QAVSDSLLRY NTTRMLRLSE SNLFLSLCRA FVEVVFPHCA TCFGRCYPGG ATIVMDAKSA
501: YEGLGRILAA SSSQEPSNKS PKVISTDTKD ASENGVASQP EEKQAENPNA KEEDNSPIPL QTPEITPES
Arabidopsis Description
Conserved oligomeric Golgi complex component-related / COG complex component-like protein [Source:UniProtKB/TrEMBL;Acc:Q84K25]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.