Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX97278 | Canola | nucleus | 95.97 | 95.65 |
| CDY21898 | Canola | nucleus | 89.26 | 88.37 |
| CDY22062 | Canola | nucleus | 89.6 | 87.83 |
| AT4G02590.1 | Thale cress | nucleus | 90.94 | 87.42 |
| CDY18011 | Canola | nucleus | 88.59 | 86.84 |
| CDX90930 | Canola | nucleus | 89.26 | 85.81 |
| CDY18143 | Canola | nucleus | 80.87 | 78.76 |
| CDX89919 | Canola | nucleus | 81.21 | 77.81 |
| Os07t0182200-01 | Rice | cytosol | 33.89 | 74.26 |
| KRG95612 | Soybean | nucleus | 70.81 | 72.26 |
| KRH32094 | Soybean | nucleus | 68.12 | 71.73 |
| VIT_07s0141g00220.t01 | Wine grape | nucleus | 69.46 | 71.63 |
| KRH67287 | Soybean | nucleus | 69.8 | 71.23 |
| Solyc09g065820.2.1 | Tomato | nucleus | 70.81 | 69.87 |
| PGSC0003DMT400049768 | Potato | nucleus | 70.47 | 69.54 |
| KRH55381 | Soybean | cytosol | 15.77 | 68.12 |
| KXG37359 | Sorghum | nucleus | 54.36 | 57.04 |
| Zm00001d013073_P002 | Maize | nucleus | 54.36 | 56.84 |
| OQU88567 | Sorghum | nucleus | 52.68 | 56.68 |
| GSMUA_Achr4P21070_001 | Banana | nucleus | 57.05 | 56.67 |
| GSMUA_Achr5P03100_001 | Banana | nucleus | 51.68 | 56.2 |
| Os03t0797600-01 | Rice | nucleus | 55.37 | 56.12 |
| TraesCS5B01G445900.1 | Wheat | nucleus | 52.68 | 55.87 |
| TraesCS5D01G449200.1 | Wheat | nucleus | 52.68 | 55.87 |
| Zm00001d018967_P001 | Maize | nucleus | 52.68 | 55.09 |
| TraesCS5A01G441900.1 | Wheat | nucleus | 49.66 | 52.67 |
| HORVU5Hr1G106310.3 | Barley | nucleus | 52.01 | 49.68 |
| GSMUA_Achr9P25560_001 | Banana | nucleus | 56.04 | 47.31 |
| CDY55014 | Canola | nucleus | 36.24 | 37.37 |
| CDY02785 | Canola | nucleus | 36.58 | 36.82 |
| CDY32733 | Canola | nucleus | 36.58 | 36.09 |
| CDY11836 | Canola | nucleus | 34.56 | 36.01 |
| CDY62262 | Canola | nucleus | 35.57 | 35.1 |
| CDX88653 | Canola | nucleus | 34.9 | 34.67 |
| CDY46132 | Canola | endoplasmic reticulum | 20.13 | 34.09 |
| CDY20290 | Canola | endoplasmic reticulum, extracellular | 22.48 | 33.0 |
| CDX68710 | Canola | nucleus | 35.91 | 32.72 |
| CDY28232 | Canola | nucleus | 35.57 | 32.42 |
| CDY34780 | Canola | nucleus | 36.58 | 32.25 |
| CDX76819 | Canola | nucleus | 36.58 | 32.06 |
| CDY20289 | Canola | nucleus | 21.81 | 30.81 |
| CDY37185 | Canola | mitochondrion | 9.73 | 29.59 |
| CDY46133 | Canola | nucleus | 16.44 | 25.65 |
| CDY24734 | Canola | plastid | 10.07 | 21.13 |
| CDY01438 | Canola | nucleus, plastid | 13.09 | 17.89 |
| CDY12804 | Canola | nucleus, plastid | 12.75 | 17.59 |
| CDY65390 | Canola | nucleus | 11.41 | 16.27 |
| CDY35224 | Canola | nucleus | 13.42 | 15.44 |
| CDY00603 | Canola | nucleus, plastid | 13.76 | 14.96 |
| CDY67566 | Canola | nucleus, plastid | 13.76 | 14.96 |
| CDY44048 | Canola | nucleus, plastid | 15.1 | 13.2 |
| CDY22448 | Canola | nucleus, plastid | 15.1 | 12.78 |
| CDX75629 | Canola | nucleus | 14.77 | 12.72 |
| CDX91917 | Canola | nucleus | 14.77 | 12.68 |
| CDX69281 | Canola | nucleus, plastid | 14.77 | 12.61 |
| CDX83214 | Canola | nucleus | 14.43 | 12.36 |
| CDY14866 | Canola | nucleus | 16.44 | 12.16 |
| CDY30375 | Canola | nucleus | 16.44 | 12.07 |
| CDY29961 | Canola | nucleus | 16.44 | 12.04 |
| CDX70453 | Canola | nucleus | 16.44 | 12.04 |
| CDX80064 | Canola | nucleus | 15.77 | 11.75 |
| CDX74328 | Canola | nucleus | 15.1 | 11.63 |
| CDX83509 | Canola | nucleus | 16.11 | 11.62 |
| CDY31989 | Canola | nucleus | 18.46 | 11.55 |
| CDY66254 | Canola | nucleus | 15.1 | 11.25 |
| CDY06865 | Canola | nucleus | 13.42 | 11.14 |
| CDY06026 | Canola | nucleus | 16.44 | 11.09 |
| CDX71916 | Canola | nucleus | 16.44 | 11.06 |
| CDY35220 | Canola | nucleus | 13.76 | 11.05 |
| CDY42809 | Canola | nucleus | 15.1 | 10.87 |
| CDY21498 | Canola | nucleus | 14.09 | 10.85 |
| CDY05725 | Canola | nucleus | 18.46 | 10.85 |
| CDX67873 | Canola | nucleus | 11.07 | 10.75 |
| CDY65446 | Canola | nucleus | 11.74 | 10.57 |
| CDY06870 | Canola | nucleus | 15.77 | 10.33 |
| CDY11401 | Canola | extracellular | 12.08 | 10.23 |
| CDY06867 | Canola | nucleus | 16.44 | 10.17 |
| CDX83349 | Canola | nucleus | 13.76 | 10.15 |
| CDY50911 | Canola | nucleus | 9.06 | 9.96 |
| CDX76616 | Canola | extracellular | 11.74 | 9.78 |
| CDX94963 | Canola | nucleus | 15.1 | 9.04 |
| CDY22636 | Canola | nucleus | 14.77 | 8.96 |
| CDY64745 | Canola | nucleus | 14.77 | 8.76 |
| CDY06358 | Canola | nucleus | 14.43 | 8.76 |
| CDY35222 | Canola | nucleus | 15.44 | 7.97 |
Protein Annotations
| EnsemblPlants:CDX91293 | EnsemblPlantsGene:GSBRNA2T00152541001 | Gene3D:4.10.280.10 | GO:A0A078DVQ2 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0046983 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | InterPro:bHLH_dom |
| PANTHER:PTHR16223 | PANTHER:PTHR16223:SF15 | PFAM:PF00010 | PFscan:PS50888 | ProteinID:CDX91293 | ProteinID:CDX91293.1 |
| SEG:seg | SMART:SM00353 | SUPFAM:SSF47459 | UniParc:UPI0004EC39EA | MapMan:15.5.32 | : |
Description
BnaC02g27040D
Coordinates
chrLK031866:-:1257440..1259759
Molecular Weight (calculated)
31726.9 Da
IEP (calculated)
6.257
GRAVY (calculated)
-0.413
Length
298 amino acids
Sequence
(BLAST)
(BLAST)
001: MAHENLSDQT PSDDFFDQIL GLPSFPASSA AVLSGGLGGG GGAPPMMLQL GSGEEGSGFH SQMFPLGLSL EQGKGPGFRR PEGGGGLGSG KRFSDDVLDH
101: PSSSMKPVFP GQPMQQPAPS APHQPTSIRP RVRARRGQAT DPHSIAERLR RERIAERIRA LQELVPTVNK TDRAAMIDEI VDYVKFLRLQ VKVLSMSRLG
201: GAGAVAPLVT DMPLSSSVED EGSEGGRTPQ AAWEKWSNDG TERQVAKLME ENVGAAMQLL QSKALCMMPI SLAMAIYHSQ PPDTSSSVVK PETNPPPP
101: PSSSMKPVFP GQPMQQPAPS APHQPTSIRP RVRARRGQAT DPHSIAERLR RERIAERIRA LQELVPTVNK TDRAAMIDEI VDYVKFLRLQ VKVLSMSRLG
201: GAGAVAPLVT DMPLSSSVED EGSEGGRTPQ AAWEKWSNDG TERQVAKLME ENVGAAMQLL QSKALCMMPI SLAMAIYHSQ PPDTSSSVVK PETNPPPP
001: MASNNPHDNL SDQTPSDDFF EQILGLPNFS ASSAAGLSGV DGGLGGGAPP MMLQLGSGEE GSHMGGLGGS GPTGFHNQMF PLGLSLDQGK GPGFLRPEGG
101: HGSGKRFSDD VVDNRCSSMK PVFHGQPMQQ PPPSAPHQPT SIRPRVRARR GQATDPHSIA ERLRRERIAE RIRALQELVP TVNKTDRAAM IDEIVDYVKF
201: LRLQVKVLSM SRLGGAGAVA PLVTDMPLSS SVEDETGEGG RTPQPAWEKW SNDGTERQVA KLMEENVGAA MQLLQSKALC MMPISLAMAI YHSQPPDTSS
301: VVKPENNPPQ
101: HGSGKRFSDD VVDNRCSSMK PVFHGQPMQQ PPPSAPHQPT SIRPRVRARR GQATDPHSIA ERLRRERIAE RIRALQELVP TVNKTDRAAM IDEIVDYVKF
201: LRLQVKVLSM SRLGGAGAVA PLVTDMPLSS SVEDETGEGG RTPQPAWEKW SNDGTERQVA KLMEENVGAA MQLLQSKALC MMPISLAMAI YHSQPPDTSS
301: VVKPENNPPQ
Arabidopsis Description
UNE12Transcription factor UNE12 [Source:UniProtKB/Swiss-Prot;Acc:O22768]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.