CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 2
plastid 5
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX68212
CDX73014
CDX73422
CDX84508
CDX86126
CDX99068
CDY11089
CDY31329
CDY38075
CDY43802
CDY56958
CDY58299
CDY60144
CDY63721

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G24020.1	CDX68212	AT1G73790.1	21798944
AT2G24020.1	CDX73014	AT1G73790.1	21798944
AT2G24020.1	CDY11089	AT1G73790.1	21798944
AT2G24020.1	CDY60144	AT1G73790.1	21798944
AT2G24020.1	CDX86126	AT3G47080.1	21798944
AT2G24020.1	CDX99068	AT3G47080.1	21798944
AT2G24020.1	CDY38075	AT3G47080.1	21798944
AT2G24020.1	CDY58299	AT3G47080.1	21798944
AT2G24020.1	CDX73422	AT3G54960.1	21798944
AT2G24020.1	CDY56958	AT3G54960.1	21798944
AT2G24020.1	CDX84508	AT5G64260.1	21798944
AT2G24020.1	CDY31329	AT5G64260.1	21798944
AT2G24020.1	CDY43802	AT5G64260.1	21798944
AT2G24020.1	CDY63721	AT5G64260.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra039224.1-P	Field mustard	plastid	99.45	99.45
CDY34804	Canola	plastid	99.45	99.45
AT2G24020.1	Thale cress	plastid	81.42	81.87
CDY23248	Canola	plastid	77.6	78.02
CDY55614	Canola	plastid	72.68	76.88
Solyc12g009980.1.1	Tomato	plastid	65.57	65.22
PGSC0003DMT400020463	Potato	mitochondrion	65.57	65.22
Os02t0180200-01	Rice	plasma membrane, plastid	64.48	63.78
EES04638	Sorghum	plastid	63.39	62.7
KRH26162	Soybean	plastid	66.12	61.73
VIT_11s0037g00330.t01	Wine grape	plastid	66.12	61.73
TraesCS6A01G147700.1	Wheat	plastid	63.39	61.7
TraesCS6D01G137000.1	Wheat	plastid	62.84	61.17
TraesCS6B01G175800.1	Wheat	plastid	62.3	60.64
KRH55034	Soybean	plastid	64.48	60.51
GSMUA_Achr4P20470_001	Banana	plastid	63.39	60.42
GSMUA_AchrUn_...	Banana	mitochondrion	67.76	54.39
Zm00001d053743_P002	Maize	plastid	64.48	53.39
Zm00001d015505_P001	Maize	plastid	61.75	38.18
CDY45942	Canola	nucleus	42.08	29.5
CDY20394	Canola	nucleus	41.53	28.9

Protein Annotations

EnsemblPlants:CDX76844	EnsemblPlantsGene:GSBRNA2T00127351001	Gene3D:3.30.1310.10	InterPro:IPR036894	InterPro:YbaB-like_sf	InterPro:YbaB/EbfC
PANTHER:PTHR33449	PANTHER:PTHR33449:SF3	PFAM:PF02575	ProteinID:CDX76844	ProteinID:CDX76844.1	SUPFAM:SSF82607
UniParc:UPI0004EB5A9F	MapMan:23.1.7.2	:	:	:	:

Description

BnaC08g34300D

Coordinates

chrLK031808:+:1382586..1384016

Molecular Weight (calculated)

19916.5 Da

IEP (calculated)

8.463

GRAVY (calculated)

-0.640

Length

183 amino acids

Sequence
(BLAST)

001: MASTTDFTKS LLSPFSQHGF NSQRGSSRQN KNATWPNQHK PNRSLRVNGL FGGGNNKDNN NTEDGQSKAG GIFGNMQNMY ETVKKAQMVV QVEAVRVQKE
101: LAAAEFDGYC EGELVKVTLS GNQQPIRTDI TEAAMELGSE KLSLLVTEAY KDAHAKSVVA MKERMSDLAQ SLGMPPGLSE GMK

Best Arabidopsis Sequence Match ( AT2G24020.1 )
(BLAST)

001: MASMAATTNF TKSMLFPFSH VSGNASLNSQ RRTWPKQYKS KNGYRSLRVN GLFGGGNKDN NSEDGQSKAG IFGNMQNMYE TVKKAQMVVQ VEAVRVQKEL
101: AAAEFDGYCA GELVKVTLSG NQQPIRTDIT EAAMELGSEK LSQLVTEAYK DAHAKSVVAM KERMSDLAQS LGMPPGLSEG MK

Arabidopsis Description

STIC2Nucleoid-associated protein At2g24020, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O82230]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.