CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, extracellular

Predictor Summary:

extracellular 7
endoplasmic reticulum 6
vacuole 5
plasma membrane 6
golgi 5
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, extracellular
Any Predictor:	plastid, secretory
BaCelLo:	secretory
EpiLoc:	extracellular
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	extracellular

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY02487
CDY08216
CDY26148
CDY33093
CDY51405
CDY61477

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G64260.1	CDY02487	AT1G54060.1	21798944
AT5G64260.1	CDY08216	AT1G54060.1	21798944
AT5G64260.1	CDY26148	AT1G54060.1	21798944
AT5G64260.1	CDY33093	AT1G54060.1	21798944
AT5G64260.1	CDY51405	AT1G54060.1	21798944
AT5G64260.1	CDY61477	AT1G54060.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra024280.1-P	Field mustard	endoplasmic reticulum, extracellular	100.0	100.0
CDX84508	Canola	endoplasmic reticulum, extracellular	97.37	97.37
AT5G64260.1	Thale cress	extracellular	91.45	91.15
CDY31329	Canola	endoplasmic reticulum, extracellular	89.14	89.14
CDY63721	Canola	endoplasmic reticulum, extracellular	88.82	88.82
CDX69904	Canola	endoplasmic reticulum, extracellular	77.3	79.12
CDY21583	Canola	extracellular	76.97	78.79
CDY40722	Canola	extracellular	67.76	74.64
KRH18203	Soybean	nucleus	73.68	73.93
KRH42138	Soybean	nucleus	72.37	72.37
CDY44798	Canola	extracellular	64.47	72.32
KRH10561	Soybean	extracellular	65.79	67.34
CDY44799	Canola	extracellular	61.51	66.79
VIT_03s0017g01210.t01	Wine grape	extracellular, vacuole	67.11	66.45
CDY40721	Canola	extracellular	32.89	65.79
KRH43888	Soybean	extracellular	63.49	65.42
Solyc04g074470.1.1	Tomato	nucleus	65.13	64.08
PGSC0003DMT400079160	Potato	extracellular, golgi	65.13	64.08
GSMUA_Achr3P20420_001	Banana	endoplasmic reticulum, vacuole	43.75	59.64
GSMUA_Achr10P...	Banana	endoplasmic reticulum, vacuole	58.55	57.42
GSMUA_Achr6P02120_001	Banana	endoplasmic reticulum, plasma membrane	43.42	57.39
GSMUA_AchrUn_...	Banana	endoplasmic reticulum, plasma membrane	55.59	55.78
GSMUA_Achr8P14380_001	Banana	extracellular	45.39	55.2
CDX90701	Canola	endoplasmic reticulum, vacuole	54.93	53.7
CDY05033	Canola	endoplasmic reticulum, vacuole	54.93	53.18
Os06t0219900-01	Rice	extracellular, plasma membrane, vacuole	52.96	51.27
TraesCS7B01G083900.1	Wheat	endoplasmic reticulum, vacuole	52.63	50.31
TraesCS7D01G180100.1	Wheat	endoplasmic reticulum, plasma membrane	51.97	49.69
TraesCS7A01G178200.1	Wheat	endoplasmic reticulum, vacuole	51.97	49.53
Zm00001d052799_P001	Maize	endoplasmic reticulum, extracellular	49.34	48.86
OQU81032	Sorghum	extracellular	50.66	48.73
Zm00001d037204_P001	Maize	golgi, mitochondrion	52.3	48.62
KXG19617	Sorghum	golgi, mitochondrion, vacuole	52.3	48.48
HORVU7Hr1G036710.2	Barley	endoplasmic reticulum, extracellular, plasma membrane	50.66	48.43
CDY31668	Canola	endoplasmic reticulum, vacuole	33.88	32.09
CDY46938	Canola	vacuole	34.54	31.16
CDX91593	Canola	vacuole	34.54	31.16
CDX84257	Canola	extracellular, vacuole	32.57	30.84
CDX92021	Canola	endoplasmic reticulum, extracellular, vacuole	30.59	28.44
CDX71355	Canola	endoplasmic reticulum, vacuole	33.55	28.33
CDY24324	Canola	endoplasmic reticulum, vacuole	33.22	28.21
CDX74229	Canola	endoplasmic reticulum, extracellular, vacuole	29.93	27.74
CDY28728	Canola	mitochondrion	30.59	22.63
CDY43160	Canola	cytosol	30.59	17.03

Protein Annotations

EnsemblPlants:CDY43802	EnsemblPlantsGene:GSBRNA2T00077307001	InterPro:EXORDIUM-like	PANTHER:PTHR31279	PANTHER:PTHR31279:SF12	PFAM:PF04674
ProteinID:CDY43802	ProteinID:CDY43802.1	SEG:seg	SignalP:SignalP-noTM	TMHMM:TMhelix	UniParc:UPI000253F3A3
UniProt:A0A078I128	MapMan:35.1	:	:	:	:

Description

BnaA06g23380DBnaA06g23380D protein [Source:UniProtKB/TrEMBL;Acc:A0A078I128]

Coordinates

chrLK032568:+:208061..209274

Molecular Weight (calculated)

32533.2 Da

IEP (calculated)

9.697

GRAVY (calculated)

0.002

Length

304 amino acids

Sequence
(BLAST)

001: MAHNYRFAIF LTLLSAIAGL SAGALVEEQP LVLKYHNGVL LKGNVTVNLI WYGKFTPIQR SVIVDFIRSL NSKDASSSAA PSVASWWKTT EKYKGGSSTL
101: VVGKQLLLEN YPLGKSLKNP YLRSLSTKLN GGLRSITVIL TAKDVTVEGF CMNRCGSHGT SVSKPRRAAN GAAYIWVGNS ETMCPGYCAW PFHQPIYGPQ
201: TPPLVAPNGD VGVDGMIINL ATLLANTVTN PFNNGYYQGP PTAPLEAVSA CTGIFGSGSY PGYPGQVLVD KTTGSSYNAR GLAGRKYLLP AMWDPQTSTC
301: KTLV

Best Arabidopsis Sequence Match ( AT5G64260.1 )
(BLAST)

001: MASNYRFAIF LTLFFATAGF SAAALVEEQP LVMKYHNGVL LKGNITVNLV WYGKFTPIQR SVIVDFIHSL NSKDVASSAA VPSVASWWKT TEKYKGGSST
101: LVVGKQLLLE NYPLGKSLKN PYLRALSTKL NGGLRSITVV LTAKDVTVER FCMSRCGTHG SSGSNPRRAA NGAAYVWVGN SETQCPGYCA WPFHQPIYGP
201: QTPPLVAPNG DVGVDGMIIN LATLLANTVT NPFNNGYYQG PPTAPLEAVS ACPGIFGSGS YPGYAGRVLV DKTTGSSYNA RGLAGRKYLL PAMWDPQSST
301: CKTLV

Arabidopsis Description

EXL2Protein EXORDIUM-like 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9FE06]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.