Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra037960.1-P | Field mustard | nucleus, plastid | 99.21 | 41.86 |
| CDY61477 | Canola | nucleus, plastid | 84.25 | 35.55 |
| CDY02487 | Canola | nucleus, plastid | 85.83 | 35.39 |
| CDY08216 | Canola | nucleus | 82.68 | 32.01 |
| CDY26148 | Canola | nucleus, plastid | 83.46 | 29.69 |
| AT1G54060.1 | Thale cress | nucleus | 84.25 | 27.94 |
| CDY33093 | Canola | cytosol, plastid | 90.55 | 26.32 |
| CDX93016 | Canola | nucleus | 25.2 | 16.16 |
| CDX75751 | Canola | nucleus | 45.67 | 15.59 |
| CDY33246 | Canola | nucleus | 37.01 | 15.36 |
| Solyc03g122030.1.1 | Tomato | nucleus | 42.52 | 14.88 |
| HORVU2Hr1G077940.1 | Barley | cytosol, nucleus, plastid | 25.98 | 14.73 |
| CDY36316 | Canola | nucleus | 29.13 | 14.68 |
| PGSC0003DMT400088401 | Potato | nucleus, plastid | 42.52 | 14.48 |
| VIT_09s0002g00720.t01 | Wine grape | nucleus | 40.94 | 14.29 |
| CDY00995 | Canola | nucleus | 27.56 | 13.67 |
| KRH47662 | Soybean | nucleus, plastid | 39.37 | 13.59 |
| CDY39099 | Canola | nucleus | 33.86 | 13.56 |
| KRH06239 | Soybean | nucleus | 39.37 | 13.51 |
| CDY39101 | Canola | nucleus, plastid | 32.28 | 13.44 |
| CDX70144 | Canola | cytosol | 23.62 | 12.0 |
| CDX71939 | Canola | nucleus, plastid | 27.56 | 11.63 |
| CDX98311 | Canola | nucleus | 28.35 | 11.54 |
| CDX67755 | Canola | nucleus | 28.35 | 11.39 |
| GSMUA_Achr8P23650_001 | Banana | nucleus | 29.92 | 11.14 |
| GSMUA_Achr9P14340_001 | Banana | nucleus | 30.71 | 10.77 |
| CDX98849 | Canola | cytosol | 23.62 | 9.77 |
| Zm00001d003549_P001 | Maize | nucleus | 28.35 | 9.35 |
| Os04t0445600-00 | Rice | nucleus | 29.92 | 9.11 |
| CDX94808 | Canola | nucleus | 22.83 | 9.03 |
| GSMUA_Achr3P05880_001 | Banana | nucleus | 28.35 | 8.91 |
| EES12241 | Sorghum | nucleus | 28.35 | 8.82 |
| Zm00001d025514_P001 | Maize | nucleus | 26.77 | 8.67 |
| Zm00001d010753_P001 | Maize | nucleus | 22.05 | 8.54 |
| TraesCS2D01G311800.1 | Wheat | nucleus, plastid | 26.77 | 8.23 |
| TraesCS2B01G332100.1 | Wheat | nucleus, plastid | 26.77 | 8.17 |
| TraesCS2A01G313300.1 | Wheat | nucleus, plastid | 26.77 | 8.17 |
| Zm00001d016876_P001 | Maize | nucleus, plastid | 24.41 | 7.71 |
| TraesCS6B01G230000.1 | Wheat | nucleus | 25.2 | 7.69 |
| HORVU6Hr1G050140.1 | Barley | nucleus, plastid | 25.2 | 7.66 |
| Os02t0565000-01 | Rice | nucleus | 25.2 | 7.64 |
| TraesCS6A01G198600.1 | Wheat | nucleus, plastid | 21.26 | 7.3 |
| TraesCS6D01G184500.2 | Wheat | nucleus | 23.62 | 7.21 |
| KXG30464 | Sorghum | nucleus, plastid | 23.62 | 7.11 |
| Zm00001d042917_P001 | Maize | golgi, plasma membrane | 21.26 | 4.07 |
Protein Annotations
| EnsemblPlants:CDY51405 | EnsemblPlantsGene:GSBRNA2T00003336001 | ncoils:Coil | PANTHER:PTHR31307 | ProteinID:CDY51405 | ProteinID:CDY51405.1 |
| SEG:seg | UniParc:UPI0004EF10C7 | UniProt:A0A078IK29 | MapMan:15.5.20 | : | : |
Description
BnaA06g01360DBnaA06g01360D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IK29]
Coordinates
chrLK032992:-:38186..38569
Molecular Weight (calculated)
14723.4 Da
IEP (calculated)
5.149
GRAVY (calculated)
-1.210
Length
127 amino acids
Sequence
(BLAST)
(BLAST)
001: MRWHFRKRSA SESESESEPE RSAESLPPPQ PLLPKRVKMG ESGVGDVAKA ILGFTEAYEK AETAKLKLMM ELEKERMKFA KEMELQRMQF LKTQMEITRN
101: NQEEERSKRE GDDDDDRNVK NNGDVSS
101: NQEEERSKRE GDDDDDRNVK NNGDVSS
001: MEDDDEIQSI PSPGDSSLSP QAPPSPPILP TNDVTVAVVK KPQPGLSSQS PSMNALALVV HTPSVTGGGG SGNRNGRGGG GGSGGGGGGR DDCWSEEATK
101: VLIEAWGDRF SEPGKGTLKQ QHWKEVAEIV NKSRQCKYPK TDIQCKNRID TVKKKYKQEK AKIASGDGPS KWVFFKKLES LIGGTTTFIA SSKASEKAPM
201: GGALGNSRSS MFKRQTKGNQ IVQQQQEKRG SDSMRWHFRK RSASETESES DPEPEASPEE SAESLPPLQP IQPLSFHMPK RLKVDKSGGG GSGVGDVARA
301: ILGFTEAYEK AETAKLKLMA ELEKERMKFA KEMELQRMQF LKTQLEITQN NQEEEERSRQ RGERRIVDDD DDRNGKNNGN VSS
101: VLIEAWGDRF SEPGKGTLKQ QHWKEVAEIV NKSRQCKYPK TDIQCKNRID TVKKKYKQEK AKIASGDGPS KWVFFKKLES LIGGTTTFIA SSKASEKAPM
201: GGALGNSRSS MFKRQTKGNQ IVQQQQEKRG SDSMRWHFRK RSASETESES DPEPEASPEE SAESLPPLQP IQPLSFHMPK RLKVDKSGGG GSGVGDVARA
301: ILGFTEAYEK AETAKLKLMA ELEKERMKFA KEMELQRMQF LKTQLEITQN NQEEEERSRQ RGERRIVDDD DDRNGKNNGN VSS
Arabidopsis Description
ASIL1Trihelix transcription factor ASIL1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SYG2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.