CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 3
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, plastid
BaCelLo:	plastid
MultiLoc:	cytosol
PProwler:	plastid
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra000622.1-P	Field mustard	plastid	99.16	99.16
CDY34036	Canola	plasma membrane	98.54	98.54
AT5G60160.1	Thale cress	cytosol	93.51	93.71
EES03335	Sorghum	cytosol	75.1	75.58
KRH63732	Soybean	cytosol	76.57	75.15
Zm00001d044102_P002	Maize	cytosol	74.69	75.0
Os12t0236500-01	Rice	cytosol	74.9	74.9
GSMUA_Achr10P...	Banana	cytosol	74.48	74.79
KRH54213	Soybean	cytosol	76.15	74.74
VIT_17s0000g01740.t01	Wine grape	cytosol	75.52	74.43
GSMUA_Achr6P12430_001	Banana	cytosol	73.64	73.95
PGSC0003DMT400039280	Potato	cytosol	74.06	73.29
Solyc03g111180.2.1	Tomato	extracellular, nucleus	73.85	73.24
TraesCS5D01G215200.2	Wheat	cytosol, golgi, unclear	71.55	72.46
TraesCS5A01G208900.2	Wheat	cytosol	71.34	72.25
TraesCS5B01G207200.1	Wheat	cytosol	71.34	72.25
HORVU5Hr1G061530.3	Barley	cytosol	71.76	67.25
CDY44874	Canola	plastid	59.83	55.32
CDX70207	Canola	plastid	60.04	54.36
VIT_05s0020g00180.t01	Wine grape	plastid	13.39	24.24

Protein Annotations

MapMan:19.4.5.6.4	Gene3D:2.30.250.10	Gene3D:3.40.630.10	GO:A0A078D209	EnsemblPlants:CDX83160	ProteinID:CDX83160
ProteinID:CDX83160.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0004177	GO:GO:0005488	GO:GO:0006508
GO:GO:0008150	GO:GO:0008152	GO:GO:0008233	GO:GO:0008237	GO:GO:0008270	GO:GO:0016787
GO:GO:0019538	GO:GO:0046872	EnsemblPlantsGene:GSBRNA2T00138688001	InterPro:IPR023358	PFAM:PF02127	PRINTS:PR00932
PANTHER:PTHR28570	InterPro:Peptidase_M18	InterPro:Peptidase_M18_dom2	SUPFAM:SSF101821	SUPFAM:SSF53187	UniParc:UPI0004EE766C

Description

BnaA03g23460D

Coordinates

chrLK031832:-:138119..140694

Molecular Weight (calculated)

52332.4 Da

IEP (calculated)

6.735

GRAVY (calculated)

-0.206

Length

478 amino acids

Sequence
(BLAST)

001: MANTTSLVSD FLSFLNASPT AFHAVDESKR RLRHAGYEQL SERDDWKLEA GKKYFFTRNY STIVAFAVGK KYEAGNGFHI IGAHTDSPCL KLKPVSKVTK
101: GGCLEVGVQT YGGGLWYTWF DRDLTVAGRV IVKEDKAGSV SYSHRLVRIE DPIMRIPTLA IHLDRNVNSE GFKPNTQTHL VPILATAIKA ELNKVPAEGG
201: EDDGGKKCTE ASSKSKHHPL LMEIVANALG CKPDEICEFE LQVCDTQPSI LGGAAKEFIF SGRLDNLCMS FCSLKALIDA TSSGSDLEEE SGVRMVALFD
301: HEEVGSNSAQ GAGSPVMIDA MSHITSCFSS DAKVLKKAIQ KSLLVSADMA HALHPNFMDK HEENHQPKMH GGLVIKHNAN QRYATNAVTS FVFREIAEKH
401: NLPVQDFVVR NDMGCGSTIG PILASSVGIR TVDVGAPQLS MHSIREMCAA DDVKHSYEHF KAFFQEFTHL DAKLTVDV

Best Arabidopsis Sequence Match ( AT5G60160.1 )
(BLAST)

001: MDKSSLVSDF LSFLNASPTA FHAVDESKRR LLKAGYEQIS ERDDWKLEAG KKYFFTRNYS TIVAFAIGHK YVAGNGFHII GAHTDSPCLK LKPVSKITKG
101: GCLEVGVQTY GGGLWYTWFD RDLTVAGRVI LKEEKAGSVS YSHRLVRIED PIMRIPTLAI HLDRNVNTEG FKPNTQTHLV PVLATAIKAE LNKTPAESGE
201: HDEGKKCAET SSKSKHHPLL MEIIANALGC KPEEICDFEL QACDTQPSIL AGAAKEFIFS GRLDNLCMSF CSLKALIDAT SSGSDLEDES GIRMVALFDH
301: EEVGSNSAQG AGSPVMIDAM SHITSCFSSD TKVLKKAIQK SLLVSADMAH ALHPNFMDKH EENHQPKMHG GLVIKHNANQ RYATNAVTSF VFREIAEKHN
401: LPVQDFVVRN DMGCGSTIGP ILASSVGIRT VDVGAPQLSM HSIREMCAAD DVKHSYEHFK AFFQEFTHLD AKLTIDV

Arabidopsis Description

AT5g60160/f15l12_20 [Source:UniProtKB/TrEMBL;Acc:Q9LST0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.