CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

plastid 3
extracellular 3
endoplasmic reticulum 3
vacuole 3
plasma membrane 3
golgi 3
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	cytosol, plastid, secretory
BaCelLo:	plastid
iPSORT:	secretory
MultiLoc:	cytosol
Predotar:	plastid
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	cytosol

plasma membrane: 26746009

msms PMID: 26746009 doi

S Chen, Y Luo, G Ding, F Xu

National Key Laboratory of Crop Genetic Improvement, and Microelement Research Center, Huazhong Agricultural University, Wuhan 430070, China., National Key Laboratory of Crop Genetic Improvement, and Microelement Research Center, Huazhong Agricultural University, Wuhan 430070, China. Electronic address: fangsenxu@mail.hzau.edu.cn., National Key Laboratory of Crop Genetic Improvement, and Microelement Research Center, Huazhong Agricultural University, Wuhan 430070, China; Key Laboratory of Agricultural Biotechnology of Liaoning Province, College of Biological Science and Technology, Shenyang Agricultural University, Shenyang 110866, China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX83160	Canola	cytosol	98.54	98.54
AT5G60160.1	Thale cress	cytosol	93.31	93.5
EES03335	Sorghum	cytosol	75.1	75.58
Zm00001d044102_P002	Maize	cytosol	74.69	75.0
GSMUA_Achr10P...	Banana	cytosol	74.48	74.79
KRH63732	Soybean	cytosol	76.15	74.74
Os12t0236500-01	Rice	cytosol	74.69	74.69
KRH54213	Soybean	cytosol	75.73	74.33
VIT_17s0000g01740.t01	Wine grape	cytosol	75.31	74.23
GSMUA_Achr6P12430_001	Banana	cytosol	73.85	74.16
Solyc03g111180.2.1	Tomato	extracellular, nucleus	74.06	73.44
PGSC0003DMT400039280	Potato	cytosol	74.06	73.29
TraesCS5D01G215200.2	Wheat	cytosol, golgi, unclear	71.55	72.46
TraesCS5A01G208900.2	Wheat	cytosol	71.34	72.25
TraesCS5B01G207200.1	Wheat	cytosol	71.34	72.25
HORVU5Hr1G061530.3	Barley	cytosol	71.76	67.25
CDY44874	Canola	plastid	59.2	54.74
CDX70207	Canola	plastid	59.62	53.98
VIT_05s0020g00180.t01	Wine grape	plastid	13.39	24.24

Protein Annotations

MapMan:19.4.5.6.4	Gene3D:2.30.250.10	Gene3D:3.40.630.10	GO:A0A078H8B6	UniProt:A0A078H8B6	EnsemblPlants:CDY34036
ProteinID:CDY34036	ProteinID:CDY34036.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0004177	GO:GO:0005488
GO:GO:0006508	GO:GO:0008150	GO:GO:0008152	GO:GO:0008233	GO:GO:0008237	GO:GO:0008270
GO:GO:0016787	GO:GO:0019538	GO:GO:0046872	EnsemblPlantsGene:GSBRNA2T00055905001	InterPro:IPR023358	PFAM:PF02127
PRINTS:PR00932	PANTHER:PTHR28570	InterPro:Peptidase_M18	InterPro:Peptidase_M18_dom2	SUPFAM:SSF101821	SUPFAM:SSF53187
UniParc:UPI0004EE61D4	SEG:seg	:	:	:	:

Description

BnaC03g27790DBnaC03g27790D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H8B6]

Coordinates

chrLK032326:-:306796..309317

Molecular Weight (calculated)

52494.5 Da

IEP (calculated)

6.581

GRAVY (calculated)

-0.207

Length

478 amino acids

Sequence
(BLAST)

001: MANTTFLVSD FLSFLNASPT AFHAVDESKR RLRHAGYEQI SERDDWKLEA GKKYFFTRNY STIVAFAVGK KYEAGNGFHI IGAHTDSPCL KLKPVSKVTK
101: GGCLEVGVQT YGGGLWYTWF DRDLTVAGRV IVKEDKAGSV SYSHRLVRIE DPIMRIPTLA IHLDRNVNSE GFKPNTQTHL VPILATAIKA ELNKVPAEGG
201: EEDGEKKCTE SSSKSKHHPL LMEIIANALG CNPDEICEFE LQVCDTQPSI LGGAAKEFIF SGRLDNLCMS FCSLKALIDA TSSGSDLEEE SGVRMVALFD
301: HEEVGSNSAQ GAGSPVMIDA MSHITSCFSS DAKVLKKAIQ KSLLVSADMA HALHPNFMDK HEENHQPKMH GGLVIKHNAN QRYATNAVTS FVFREIAEKH
401: NLPVQDFVVR NDMGCGSTIG PILASSVGIR TVDVGAPQLS MHSIREMCAA DDVKHSYEHF KAFFQEFTHL DAKLTVDV

Best Arabidopsis Sequence Match ( AT5G60160.1 )
(BLAST)

001: MDKSSLVSDF LSFLNASPTA FHAVDESKRR LLKAGYEQIS ERDDWKLEAG KKYFFTRNYS TIVAFAIGHK YVAGNGFHII GAHTDSPCLK LKPVSKITKG
101: GCLEVGVQTY GGGLWYTWFD RDLTVAGRVI LKEEKAGSVS YSHRLVRIED PIMRIPTLAI HLDRNVNTEG FKPNTQTHLV PVLATAIKAE LNKTPAESGE
201: HDEGKKCAET SSKSKHHPLL MEIIANALGC KPEEICDFEL QACDTQPSIL AGAAKEFIFS GRLDNLCMSF CSLKALIDAT SSGSDLEDES GIRMVALFDH
301: EEVGSNSAQG AGSPVMIDAM SHITSCFSSD TKVLKKAIQK SLLVSADMAH ALHPNFMDKH EENHQPKMHG GLVIKHNANQ RYATNAVTSF VFREIAEKHN
401: LPVQDFVVRN DMGCGSTIGP ILASSVGIRT VDVGAPQLSM HSIREMCAAD DVKHSYEHFK AFFQEFTHLD AKLTIDV

Arabidopsis Description

AT5g60160/f15l12_20 [Source:UniProtKB/TrEMBL;Acc:Q9LST0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.