Factsheet for Solyc03g111180.2.1

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, nucleus

Predictor Summary:

cytosol 5
plastid 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

extracellular: 22364583
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 22364583 doi

P Shah, AL Powell, R Orlando, C Bergmann, G Gutierrez-Sanchez

Complex Carbohydrate Research Center, University of Georgia, Athens, Georgia, United States.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400039280	Potato	cytosol	93.57	93.37
VIT_17s0000g01740.t01	Wine grape	cytosol	76.14	75.67
AT5G60160.1	Thale cress	cytosol	74.69	75.47
CDY34036	Canola	plasma membrane	73.44	74.06
Zm00001d044102_P002	Maize	cytosol	73.03	73.95
Bra000622.1-P	Field mustard	plastid	73.24	73.85
CDX83160	Canola	cytosol	73.24	73.85
EES03335	Sorghum	cytosol	72.41	73.47
KRH54213	Soybean	cytosol	73.86	73.1
KRH63732	Soybean	cytosol	73.65	72.9
GSMUA_Achr6P12430_001	Banana	cytosol	71.78	72.69
GSMUA_Achr10P...	Banana	cytosol	71.58	72.48
Os12t0236500-01	Rice	cytosol	71.58	72.18
TraesCS5D01G215200.2	Wheat	cytosol, golgi, unclear	70.33	71.82
TraesCS5A01G208900.2	Wheat	cytosol	70.12	71.61
TraesCS5B01G207200.1	Wheat	cytosol	70.12	71.61
HORVU5Hr1G061530.3	Barley	cytosol	70.33	66.47
Solyc11g007090.1.1	Tomato	cytosol, endoplasmic reticulum	49.79	58.68
VIT_05s0020g00180.t01	Wine grape	plastid	14.52	26.52

Protein Annotations

MapMan:19.4.5.6.4	Gene3D:2.30.250.10	Gene3D:3.40.630.10	GO:GO:0003674	GO:GO:0003824	GO:GO:0004177
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005773
GO:GO:0005774	GO:GO:0005829	GO:GO:0006508	GO:GO:0006518	GO:GO:0008150	GO:GO:0008152
GO:GO:0008233	GO:GO:0008237	GO:GO:0008270	GO:GO:0009987	GO:GO:0016020	GO:GO:0016787
GO:GO:0019538	GO:GO:0046686	GO:GO:0046872	GO:GO:0061077	GO:GO:0070006	InterPro:IPR023358
UniProt:K4BJY1	MEROPS:M18.A01	PFAM:PF02127	PRINTS:PR00932	PANTHER:PTHR28570	PANTHER:PTHR28570:SF3
InterPro:Peptidase_M18	InterPro:Peptidase_M18_dom2	SUPFAM:SSF101821	SUPFAM:SSF53187	EnsemblPlantsGene:Solyc03g111180.2	EnsemblPlants:Solyc03g111180.2.1
UniParc:UPI0002768D13	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr3:-:61827966..61834486

Molecular Weight (calculated)

52816.0 Da

IEP (calculated)

6.853

GRAVY (calculated)

-0.183

Length

482 amino acids

Sequence
(BLAST)

001: MESSAVASDL VDFLNASPTA FHAVDEAKKR LKSAGYVQID EKLDWDLKAG NKYFFTRNYS TIVAFAIGKK YVAGNGFHIV GAHTDSPCLK LKPVTKVIKS
101: GFLEVGVQTY GGGLWHTWFD RDLTVAGRMI IRNKKDSSES YLHKLVRIEE PIMRIPTLAI HLDRGVNDGF KVNTQTHLLP VLATSIKAEL NKPASIDDAT
201: GNAAPNDRCK SSKRTPGGEQ HHSLLLQLLA AQAGCEPGDI CDFELQACDT QPSIIAGAMK EFVFSGRLDN LCMSFCSLKA LIDATSPENS LEDEVGVRMV
301: ALFDHEEVGS NSAQGAGSPV MFDALSRITS TFGPDSKLIQ KAIQKSFLVS ADMAHALHPN YPDKHEENHQ PKFHGGLVIK HNANQRYATN AITSFVFREI
401: AAKHNIPLQD FVIRNDMPCG STIGPILASG VGIRTVDVGA PQWSMHSIRE MCAVDDVKHS YDHFKAFFQD FSQLDGKIAV DI

Best Arabidopsis Sequence Match ( AT5G60160.1 )
(BLAST)

001: MDKSSLVSDF LSFLNASPTA FHAVDESKRR LLKAGYEQIS ERDDWKLEAG KKYFFTRNYS TIVAFAIGHK YVAGNGFHII GAHTDSPCLK LKPVSKITKG
101: GCLEVGVQTY GGGLWYTWFD RDLTVAGRVI LKEEKAGSVS YSHRLVRIED PIMRIPTLAI HLDRNVNTEG FKPNTQTHLV PVLATAIKAE LNKTPAESGE
201: HDEGKKCAET SSKSKHHPLL MEIIANALGC KPEEICDFEL QACDTQPSIL AGAAKEFIFS GRLDNLCMSF CSLKALIDAT SSGSDLEDES GIRMVALFDH
301: EEVGSNSAQG AGSPVMIDAM SHITSCFSSD TKVLKKAIQK SLLVSADMAH ALHPNFMDKH EENHQPKMHG GLVIKHNANQ RYATNAVTSF VFREIAEKHN
401: LPVQDFVVRN DMGCGSTIGP ILASSVGIRT VDVGAPQLSM HSIREMCAAD DVKHSYEHFK AFFQEFTHLD AKLTIDV

Arabidopsis Description

AT5g60160/f15l12_20 [Source:UniProtKB/TrEMBL;Acc:Q9LST0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.