Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 2
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra000622.1-P | Field mustard | plastid | 93.71 | 93.51 |
| CDX83160 | Canola | cytosol | 93.71 | 93.51 |
| CDY34036 | Canola | plasma membrane | 93.5 | 93.31 |
| Zm00001d044102_P002 | Maize | cytosol | 74.84 | 75.0 |
| EES03335 | Sorghum | cytosol | 74.63 | 74.95 |
| Solyc03g111180.2.1 | Tomato | extracellular, nucleus | 75.47 | 74.69 |
| Os12t0236500-01 | Rice | cytosol | 74.63 | 74.48 |
| PGSC0003DMT400039280 | Potato | cytosol | 75.26 | 74.33 |
| KRH63732 | Soybean | cytosol | 75.47 | 73.92 |
| GSMUA_Achr10P... | Banana | cytosol | 73.58 | 73.74 |
| VIT_17s0000g01740.t01 | Wine grape | cytosol | 74.84 | 73.61 |
| KRH54213 | Soybean | cytosol | 75.05 | 73.51 |
| GSMUA_Achr6P12430_001 | Banana | cytosol | 73.17 | 73.32 |
| TraesCS5D01G215200.2 | Wheat | cytosol, golgi, unclear | 71.91 | 72.67 |
| TraesCS5A01G208900.2 | Wheat | cytosol | 71.7 | 72.46 |
| TraesCS5B01G207200.1 | Wheat | cytosol | 71.7 | 72.46 |
| HORVU5Hr1G061530.3 | Barley | cytosol | 72.12 | 67.45 |
| AT5G04710.1 | Thale cress | plastid | 58.7 | 53.23 |
| VIT_05s0020g00180.t01 | Wine grape | plastid | 14.05 | 25.38 |
Protein Annotations
| MapMan:19.4.5.6.4 | Gene3D:2.30.250.10 | Gene3D:3.40.630.10 | EntrezGene:836138 | UniProt:A0A178ULL0 | ProteinID:AED97287.1 |
| ArrayExpress:AT5G60160 | EnsemblPlantsGene:AT5G60160 | RefSeq:AT5G60160 | TAIR:AT5G60160 | RefSeq:AT5G60160-TAIR-G | EnsemblPlants:AT5G60160.1 |
| TAIR:AT5G60160.1 | EMBL:AY045584 | EMBL:AY133535 | Unigene:At.23980 | ProteinID:BAA97497.1 | GO:GO:0003674 |
| GO:GO:0003824 | GO:GO:0004177 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0005773 | GO:GO:0005774 | GO:GO:0005829 | GO:GO:0006508 | GO:GO:0006518 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008233 | GO:GO:0008237 | GO:GO:0008270 | GO:GO:0009987 |
| GO:GO:0016020 | GO:GO:0016787 | GO:GO:0019538 | GO:GO:0046686 | GO:GO:0046872 | GO:GO:0061077 |
| GO:GO:0070006 | InterPro:IPR023358 | MEROPS:M18.A01 | RefSeq:NP_200824.1 | ProteinID:OAO93541.1 | PFAM:PF02127 |
| PO:PO:0000005 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000084 | PO:PO:0000230 | PO:PO:0000293 |
| PO:PO:0001016 | PO:PO:0001017 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 |
| PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 |
| PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 |
| PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 |
| PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 |
| PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025195 | PO:PO:0025281 | PRINTS:PR00932 |
| PANTHER:PTHR28570 | InterPro:Peptidase_M18 | InterPro:Peptidase_M18_dom2 | UniProt:Q9LST0 | SUPFAM:SSF101821 | SUPFAM:SSF53187 |
| UniParc:UPI000009C8BC | : | : | : | : | : |
Description
AT5g60160/f15l12_20 [Source:UniProtKB/TrEMBL;Acc:Q9LST0]
Coordinates
chr5:-:24223647..24226914
Molecular Weight (calculated)
52428.6 Da
IEP (calculated)
6.763
GRAVY (calculated)
-0.203
Length
477 amino acids
Sequence
(BLAST)
(BLAST)
001: MDKSSLVSDF LSFLNASPTA FHAVDESKRR LLKAGYEQIS ERDDWKLEAG KKYFFTRNYS TIVAFAIGHK YVAGNGFHII GAHTDSPCLK LKPVSKITKG
101: GCLEVGVQTY GGGLWYTWFD RDLTVAGRVI LKEEKAGSVS YSHRLVRIED PIMRIPTLAI HLDRNVNTEG FKPNTQTHLV PVLATAIKAE LNKTPAESGE
201: HDEGKKCAET SSKSKHHPLL MEIIANALGC KPEEICDFEL QACDTQPSIL AGAAKEFIFS GRLDNLCMSF CSLKALIDAT SSGSDLEDES GIRMVALFDH
301: EEVGSNSAQG AGSPVMIDAM SHITSCFSSD TKVLKKAIQK SLLVSADMAH ALHPNFMDKH EENHQPKMHG GLVIKHNANQ RYATNAVTSF VFREIAEKHN
401: LPVQDFVVRN DMGCGSTIGP ILASSVGIRT VDVGAPQLSM HSIREMCAAD DVKHSYEHFK AFFQEFTHLD AKLTIDV
101: GCLEVGVQTY GGGLWYTWFD RDLTVAGRVI LKEEKAGSVS YSHRLVRIED PIMRIPTLAI HLDRNVNTEG FKPNTQTHLV PVLATAIKAE LNKTPAESGE
201: HDEGKKCAET SSKSKHHPLL MEIIANALGC KPEEICDFEL QACDTQPSIL AGAAKEFIFS GRLDNLCMSF CSLKALIDAT SSGSDLEDES GIRMVALFDH
301: EEVGSNSAQG AGSPVMIDAM SHITSCFSSD TKVLKKAIQK SLLVSADMAH ALHPNFMDKH EENHQPKMHG GLVIKHNANQ RYATNAVTSF VFREIAEKHN
401: LPVQDFVVRN DMGCGSTIGP ILASSVGIRT VDVGAPQLSM HSIREMCAAD DVKHSYEHFK AFFQEFTHLD AKLTIDV
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.