Factsheet for TraesCS5D01G215200.2

Subcellular Localization

min:

: max

Winner_takes_all: golgi, unclear, cytosol

Predictor Summary:

cytosol 3
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, golgi, unclear
Any Predictor:	cytosol
MultiLoc:	cytosol
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

golgi: 25769308
unclear: 25769308

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5B01G207200.1	Wheat	cytosol	99.15	99.15
TraesCS5A01G208900.2	Wheat	cytosol	99.15	99.15
HORVU5Hr1G061530.3	Barley	cytosol	96.61	89.41
Zm00001d044102_P002	Maize	cytosol	90.04	89.29
Os12t0236500-01	Rice	cytosol	89.83	88.7
EES03335	Sorghum	cytosol	88.77	88.21
GSMUA_Achr6P12430_001	Banana	cytosol	77.97	77.31
GSMUA_Achr10P...	Banana	cytosol	76.06	75.42
KRH54213	Soybean	cytosol	75.21	72.9
KRH63732	Soybean	cytosol	75.0	72.69
AT5G60160.1	Thale cress	cytosol	72.67	71.91
Bra000622.1-P	Field mustard	plastid	72.67	71.76
CDY34036	Canola	plasma membrane	72.46	71.55
CDX83160	Canola	cytosol	72.46	71.55
VIT_17s0000g01740.t01	Wine grape	cytosol	72.88	70.93
Solyc03g111180.2.1	Tomato	extracellular, nucleus	71.82	70.33
PGSC0003DMT400039280	Potato	cytosol	71.61	69.98
TraesCS3D01G525700.1	Wheat	nucleus	58.47	53.38
VIT_05s0020g00180.t01	Wine grape	plastid	14.62	26.14

Protein Annotations

MapMan:19.4.5.6.4	Gene3D:2.30.250.10	Gene3D:3.40.630.10	GO:GO:0003674	GO:GO:0003824	GO:GO:0004177
GO:GO:0005488	GO:GO:0006508	GO:GO:0008150	GO:GO:0008152	GO:GO:0008270	GO:GO:0016787
GO:GO:0019538	InterPro:IPR023358	PFAM:PF02127	PRINTS:PR00932	PANTHER:PTHR28570	InterPro:Peptidase_M18
InterPro:Peptidase_M18_dom2	SUPFAM:SSF101821	SUPFAM:SSF53187	EnsemblPlantsGene:TraesCS5D01G215200	EnsemblPlants:TraesCS5D01G215200.2	TIGR:cd05658

Description

No Description!

Coordinates

chr5D:+:324581093..324588433

Molecular Weight (calculated)

52081.4 Da

IEP (calculated)

6.470

GRAVY (calculated)

-0.153

Length

472 amino acids

Sequence
(BLAST)

001: MAAVVSDLVD FLNASPTAFH AVDEAKRLLK AAGFEQLSER EEWSGLQPGR KYFFTRNHSA IVAFAIGAKY VAGNGFHIIG AHTDSPCLKL KPVTKITKGG
101: YLEVGVQTYG GGLWYTWFDR DLTIAGRVLV REKKDGVVSY GHKLVRVQEP IMRIPTLAIH LDRTISSEGL KINNQNHLVP VLGTLIKHEM QKLVEGNVPG
201: ESSGGENTKH HPLLLQLIAK EANCEVDEIC DFELQLCDTQ PSVVAGAMKE FIFSGRLDNL CMSFCSLKAL VESTSTDHSL DHESGVRMVA LFDHEEVGSD
301: SAQGAGSPAM LDALTRITGC FNHSNSKLLE KAIQRSFLVS ADMAHALHPN YMEKHEENHQ PKLHGGLVIK HNANQRYATN AVTAFIFREI AERHQLPIQD
401: FVVRNDMACG STIGPILASG VGIRTVDIGA PQLSMHSIRE MCAVDDVNYS YEHLKAYFEE FTELDNKVKV DC

Best Arabidopsis Sequence Match ( AT5G60160.1 )
(BLAST)

001: MDKSSLVSDF LSFLNASPTA FHAVDESKRR LLKAGYEQIS ERDDWKLEAG KKYFFTRNYS TIVAFAIGHK YVAGNGFHII GAHTDSPCLK LKPVSKITKG
101: GCLEVGVQTY GGGLWYTWFD RDLTVAGRVI LKEEKAGSVS YSHRLVRIED PIMRIPTLAI HLDRNVNTEG FKPNTQTHLV PVLATAIKAE LNKTPAESGE
201: HDEGKKCAET SSKSKHHPLL MEIIANALGC KPEEICDFEL QACDTQPSIL AGAAKEFIFS GRLDNLCMSF CSLKALIDAT SSGSDLEDES GIRMVALFDH
301: EEVGSNSAQG AGSPVMIDAM SHITSCFSSD TKVLKKAIQK SLLVSADMAH ALHPNFMDKH EENHQPKMHG GLVIKHNANQ RYATNAVTSF VFREIAEKHN
401: LPVQDFVVRN DMGCGSTIGP ILASSVGIRT VDVGAPQLSM HSIREMCAAD DVKHSYEHFK AFFQEFTHLD AKLTIDV

Arabidopsis Description

AT5g60160/f15l12_20 [Source:UniProtKB/TrEMBL;Acc:Q9LST0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.