Factsheet for VIT_05s0020g00180.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 2
vacuole 1
plastid 4
cytosol 2
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_17s0000g01740.t01	Wine grape	cytosol	29.92	16.29
KRH63732	Soybean	cytosol	28.79	15.61
KRH54213	Soybean	cytosol	28.41	15.4
EES03335	Sorghum	cytosol	26.89	14.95
Os12t0236500-01	Rice	cytosol	26.89	14.85
TraesCS5D01G215200.2	Wheat	cytosol, golgi, unclear	26.14	14.62
TraesCS5B01G207200.1	Wheat	cytosol	26.14	14.62
TraesCS5A01G208900.2	Wheat	cytosol	26.14	14.62
Solyc03g111180.2.1	Tomato	extracellular, nucleus	26.52	14.52
Zm00001d044102_P002	Maize	cytosol	25.76	14.29
GSMUA_Achr6P12430_001	Banana	cytosol	25.76	14.29
PGSC0003DMT400039280	Potato	cytosol	25.76	14.08
GSMUA_Achr10P...	Banana	cytosol	25.38	14.08
AT5G60160.1	Thale cress	cytosol	25.38	14.05
HORVU5Hr1G061530.3	Barley	cytosol	26.52	13.73
CDY34036	Canola	plasma membrane	24.24	13.39
CDX83160	Canola	cytosol	24.24	13.39
Bra000622.1-P	Field mustard	plastid	23.86	13.18
VIT_13s0106g00700.t01	Wine grape	plastid	22.35	11.03

Protein Annotations

MapMan:19.4.5.6.4	Gene3D:2.30.250.10	ProteinID:CCB50256	ProteinID:CCB50256.1	UniProt:F6HDZ8	EMBL:FN595749
GO:GO:0003674	GO:GO:0003824	GO:GO:0004146	GO:GO:0004177	GO:GO:0004799	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006508	GO:GO:0006518
GO:GO:0006730	GO:GO:0008150	GO:GO:0008152	GO:GO:0008270	GO:GO:0009987	GO:GO:0016740
GO:GO:0016787	GO:GO:0019538	GO:GO:0032259	GO:GO:0055114	GO:GO:0070006	InterPro:IPR023358
PFAM:PF02127	PANTHER:PTHR28570	PANTHER:PTHR28570:SF3	InterPro:Peptidase_M18	InterPro:Peptidase_M18_dom2	UniParc:UPI00021081B1
ArrayExpress:VIT_05s0020g00180	EnsemblPlantsGene:VIT_05s0020g00180	EnsemblPlants:VIT_05s0020g00180.t01	:	:	:

Description

No Description!

Coordinates

chr5:+:2065185..2066133

Molecular Weight (calculated)

30205.3 Da

IEP (calculated)

7.973

GRAVY (calculated)

-0.346

Length

264 amino acids

Sequence
(BLAST)

001: MHAWPPCNTQ SHCTRIIPSW KNDTDLLQVC TRRSSGIGSP SSLECGTFIP TIGAYVFHSW YSSVPLSESS VLYASVTYDR VKSSVLESFA LSSGLNFNGD
101: SVPNKLEIPG FTFLLKMVLL TVELMRKQKS NERTKTDNSR HHSLLLQLHA TRLGCEPDDI CDFGLQACDT QPNTVADPMK EFIFSGKLNL IMIMTLYLVA
201: ALEAQRYMRI HFTHHEIRFD RALEKRKNVD KYAEKEKAKT RRKMHEFENP LEADEFQICQ RCSM

Best Arabidopsis Sequence Match ( AT5G60160.1 )
(BLAST)

001: MDKSSLVSDF LSFLNASPTA FHAVDESKRR LLKAGYEQIS ERDDWKLEAG KKYFFTRNYS TIVAFAIGHK YVAGNGFHII GAHTDSPCLK LKPVSKITKG
101: GCLEVGVQTY GGGLWYTWFD RDLTVAGRVI LKEEKAGSVS YSHRLVRIED PIMRIPTLAI HLDRNVNTEG FKPNTQTHLV PVLATAIKAE LNKTPAESGE
201: HDEGKKCAET SSKSKHHPLL MEIIANALGC KPEEICDFEL QACDTQPSIL AGAAKEFIFS GRLDNLCMSF CSLKALIDAT SSGSDLEDES GIRMVALFDH
301: EEVGSNSAQG AGSPVMIDAM SHITSCFSSD TKVLKKAIQK SLLVSADMAH ALHPNFMDKH EENHQPKMHG GLVIKHNANQ RYATNAVTSF VFREIAEKHN
401: LPVQDFVVRN DMGCGSTIGP ILASSVGIRT VDVGAPQLSM HSIREMCAAD DVKHSYEHFK AFFQEFTHLD AKLTIDV

Arabidopsis Description

AT5g60160/f15l12_20 [Source:UniProtKB/TrEMBL;Acc:Q9LST0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.