Factsheet for VIT_17s0000g01740.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 4
mitochondrion 2
plastid 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400039280	Potato	cytosol	76.91	77.23
EES03335	Sorghum	cytosol	74.64	76.21
Solyc03g111180.2.1	Tomato	extracellular, nucleus	75.67	76.14
CDX83160	Canola	cytosol	74.43	75.52
KRH54213	Soybean	cytosol	75.67	75.36
CDY34036	Canola	plasma membrane	74.23	75.31
Zm00001d044102_P002	Maize	cytosol	73.81	75.21
Bra000622.1-P	Field mustard	plastid	73.81	74.9
AT5G60160.1	Thale cress	cytosol	73.61	74.84
GSMUA_Achr6P12430_001	Banana	cytosol	73.4	74.79
GSMUA_Achr10P...	Banana	cytosol	73.2	74.58
KRH63732	Soybean	cytosol	74.85	74.54
Os12t0236500-01	Rice	cytosol	73.2	74.27
TraesCS5D01G215200.2	Wheat	cytosol, golgi, unclear	70.93	72.88
TraesCS5A01G208900.2	Wheat	cytosol	70.72	72.67
TraesCS5B01G207200.1	Wheat	cytosol	70.72	72.67
HORVU5Hr1G061530.3	Barley	cytosol	70.52	67.06
VIT_13s0106g00700.t01	Wine grape	plastid	54.43	49.35
VIT_05s0020g00180.t01	Wine grape	plastid	16.29	29.92

Protein Annotations

EntrezGene:100249091	wikigene:100249091	MapMan:19.4.5.6.4	Gene3D:2.30.250.10	Gene3D:3.40.630.10	ProteinID:CBI15632
ProteinID:CBI15632.3	UniProt:D7SGV2	EMBL:FN594950	GO:GO:0003674	GO:GO:0003824	GO:GO:0004177
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006508
GO:GO:0006518	GO:GO:0008150	GO:GO:0008152	GO:GO:0008233	GO:GO:0008237	GO:GO:0008270
GO:GO:0009987	GO:GO:0016787	GO:GO:0019538	GO:GO:0046872	GO:GO:0070006	InterPro:IPR023358
EntrezGene:LOC100249091	wikigene:LOC100249091	MEROPS:M18.002	MEROPS:M18.A01	PFAM:PF02127	PRINTS:PR00932
PANTHER:PTHR28570	PANTHER:PTHR28570:SF3	InterPro:Peptidase_M18	InterPro:Peptidase_M18_dom2	SUPFAM:SSF101821	SUPFAM:SSF53187
TIGR:TC53915	TIGR:TC58837	UniParc:UPI00019850EF	ArrayExpress:VIT_17s0000g01740	EnsemblPlantsGene:VIT_17s0000g01740	EnsemblPlants:VIT_17s0000g01740.t01
unigene:Vvi.1803	RefSeq:XP_002283475	RefSeq:XP_002283475.1	SEG:seg	:	:

Description

No Description!

Coordinates

chr17:-:1287304..1293247

Molecular Weight (calculated)

53513.7 Da

IEP (calculated)

6.426

GRAVY (calculated)

-0.222

Length

485 amino acids

Sequence
(BLAST)

001: MAKEEQQIEG NDVVSDLINF LNSSPTAFHA VDEAKKLLKE SGFVQVSERD NWNLEAGKRY FFTRNYSTIV AFAIGKKYVP GNGFCIVGAH TDSPCLKLKP
101: ISKVTKGGYL EVGVQTYGGG LWHTWFDRDL TVAGRVIIRE GKDAFSHKLV RIEEPIMRIP NLAIHLDRGV NDGFKVNAHS HLVPILATEI KAELNKVVSE
201: NGPVKSGADE KKSNERTKTD NSRHHSLLLQ LLATRLGCEP DDICDFELQA CDTQPSTVAG AMKEFIFSGR LDNLCMSFCS LKAMIDATAS ESTLEEETGV
301: RMVALFDHEE IGSNSAQGAG SPVMFDALSQ ITNSFTSDSK LLQIAIQRSF LVSADMAHAL HPNYMDKHDE NHQPKLHGGL VIKHNANQRY ATNAVTSFIF
401: KEIAAKHNLP VQDFVVRNDM PCGSTIGPIL ASGVGIRTVD VGAPQLSMHS IREMSAVDDV KHSYEHFRAY FQEFSCLDAK ITVDI

Best Arabidopsis Sequence Match ( AT5G60160.1 )
(BLAST)

001: MDKSSLVSDF LSFLNASPTA FHAVDESKRR LLKAGYEQIS ERDDWKLEAG KKYFFTRNYS TIVAFAIGHK YVAGNGFHII GAHTDSPCLK LKPVSKITKG
101: GCLEVGVQTY GGGLWYTWFD RDLTVAGRVI LKEEKAGSVS YSHRLVRIED PIMRIPTLAI HLDRNVNTEG FKPNTQTHLV PVLATAIKAE LNKTPAESGE
201: HDEGKKCAET SSKSKHHPLL MEIIANALGC KPEEICDFEL QACDTQPSIL AGAAKEFIFS GRLDNLCMSF CSLKALIDAT SSGSDLEDES GIRMVALFDH
301: EEVGSNSAQG AGSPVMIDAM SHITSCFSSD TKVLKKAIQK SLLVSADMAH ALHPNFMDKH EENHQPKMHG GLVIKHNANQ RYATNAVTSF VFREIAEKHN
401: LPVQDFVVRN DMGCGSTIGP ILASSVGIRT VDVGAPQLSM HSIREMCAAD DVKHSYEHFK AFFQEFTHLD AKLTIDV

Arabidopsis Description

AT5g60160/f15l12_20 [Source:UniProtKB/TrEMBL;Acc:Q9LST0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.