CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 3
plastid 4
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX70438
CDX72151
CDX72718
CDX73439
CDX73773
CDX74329
CDX77962
CDX78273
CDX78461
CDX79176
CDX80127
CDX80128
CDX83322
CDX86457
CDX89437
CDX90305
CDX90677
CDX91181
CDX91876
CDX91916
CDX95730
CDY03368
CDY07174
CDY08148
CDY12116
CDY22394
CDY24801
CDY27228
CDY27474
CDY28989
CDY35449
CDY48504
CDY53013
CDY53014
CDY55534
CDY58518
CDY67475
CDY67814
CDY67893

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G32840.1	CDX80127	AT2G47700.1	21798944
AT2G32840.1	CDY53013	AT2G47700.1	21798944
AT2G32840.1	CDX80128	AT2G47710.1	21798944
AT2G32840.1	CDX83322	AT2G47710.1	21798944
AT2G32840.1	CDX95730	AT2G47710.1	21798944
AT2G32840.1	CDY27474	AT2G47710.1	21798944
AT2G32840.1	CDY53014	AT2G47710.1	21798944
AT2G32840.1	CDY55534	AT2G47710.1	21798944
AT2G32840.1	CDX86457	AT3G27960.1	21798944
AT2G32840.1	CDY58518	AT3G27960.1	21798944
AT2G32840.1	CDY08148	AT3G49580.1	21798944
AT2G32840.1	CDX73773	AT3G50910.1	21798944
AT2G32840.1	CDX77962	AT3G50910.1	21798944
AT2G32840.1	CDX90677	AT3G50910.1	21798944
AT2G32840.1	CDY28989	AT3G50910.1	21798944
AT2G32840.1	CDY67893	AT3G50910.1	21798944
AT2G32840.1	CDX73439	AT3G54850.1	21798944
AT2G32840.1	CDX78273	AT3G54850.1	21798944
AT2G32840.1	CDX72151	AT3G56270.1	21798944
AT2G32840.1	CDY27228	AT3G56270.1	21798944
AT2G32840.1	CDX74329	AT4G00120.1	21798944
AT2G32840.1	CDX91916	AT4G00120.1	21798944
AT2G32840.1	CDX79176	AT4G01090.1	21798944
AT2G32840.1	CDX91876	AT4G01090.1	21798944
AT2G32840.1	CDY07174	AT4G01090.1	21798944
AT2G32840.1	CDY48504	AT4G01090.1	21798944
AT2G32840.1	CDY67475	AT4G01090.1	21798944
AT2G32840.1	CDY24801	AT4G23770.1	21798944
AT2G32840.1	CDY35449	AT4G23770.1	21798944
AT2G32840.1	CDX89437	AT4G25200.1	21798944
AT2G32840.1	CDY03368	AT4G25200.1	21798944
AT2G32840.1	CDX72718	AT4G39050.1	21798944
AT2G32840.1	CDX90305	AT4G39050.1	21798944
AT2G32840.1	CDY12116	AT4G39050.1	21798944
AT2G32840.1	CDY22394	AT4G39050.1	21798944
AT2G32840.1	CDX70438	AT5G11980.1	21798944
AT2G32840.1	CDX78461	AT5G11980.1	21798944
AT2G32840.1	CDX91181	AT5G11980.1	21798944
AT2G32840.1	CDY67814	AT5G11980.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra005553.1-P	Field mustard	nucleus, plastid	90.57	89.97
CDY52552	Canola	nucleus, plastid	76.43	77.21
AT2G32840.1	Thale cress	nucleus, plastid	55.22	48.66
CDY18271	Canola	plastid	45.45	45.45
CDX89775	Canola	plastid	48.48	42.6
VIT_13s0156g00270.t01	Wine grape	cytosol	17.85	41.73
GSMUA_Achr7P11350_001	Banana	endoplasmic reticulum, extracellular	22.9	39.31
KRH43426	Soybean	cytosol	29.97	32.84
GSMUA_Achr6P06320_001	Banana	nucleus	11.78	32.71
KRH13875	Soybean	cytosol, nucleus, plastid	30.98	31.94
Solyc01g073920.2.1	Tomato	cytosol, plastid	32.66	28.36
EER92590	Sorghum	plastid	25.59	24.6
TraesCS4A01G076800.1	Wheat	plastid	28.62	22.61
TraesCS4D01G234100.1	Wheat	plastid	28.62	22.55
TraesCS4B01G232900.1	Wheat	plastid	27.61	21.64
HORVU4Hr1G064990.1	Barley	plastid	27.61	20.97
Os03t0234600-00	Rice	plastid	18.18	20.38
Zm00001d047985_P002	Maize	plastid	24.24	19.73
PGSC0003DMT400016192	Potato	nucleus, plastid	16.5	17.13

Protein Annotations

EnsemblPlants:CDY12159	EnsemblPlantsGene:GSBRNA2T00061161001	GO:A0A078FGL9	GO:GO:0005575	GO:GO:0007049	GO:GO:0008150
GO:GO:0009987	GO:GO:0017053	InterPro:LIN37	ncoils:Coil	PANTHER:PTHR37173	PFAM:PF15306
ProteinID:CDY12159	ProteinID:CDY12159.1	UniParc:UPI0004EF27F6	UniProt:A0A078FGL9	MapMan:35.2	:

Description

BnaC04g11890DBnaC04g11890D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FGL9]

Coordinates

chrLK032018:+:61424..63052

Molecular Weight (calculated)

32661.0 Da

IEP (calculated)

10.884

GRAVY (calculated)

-0.758

Length

297 amino acids

Sequence
(BLAST)

001: MSTPDPNPSV SLAAASETPM TQPSTVKTPS PQPSYRAIAP LHRQPQPQPN IHPFPVRRSN PVSGSPHQDP SALVYPGRGL PTRPGRQSPS IVADPSSGGY
101: PPLPYQNGQG LDPVSQFMRA AQPQIQHASH LGPGHLKGVP HFLQPRVAHP PSTSVLDNGG RKNSRSRNDV LVLIRKRKVR ITEGASLYSL CRSWLRNGAH
201: EGLQKHQSDT TVTCLPKPLP ASVVVETSLP KDSVEEPNRV QDKEDEESVK QLSDADLLKR HVDRAKKVRA RLREERLKRI GRYKARLALL LPPFGEQ

Best Arabidopsis Sequence Match ( AT2G32840.1 )
(BLAST)

001: MSTPDPNPNP NPNPSVSVAV STPIVTASES PVTQPNTVIT PSSQPQPQTP ASSYRAIAPL HRHHPHQNIY TNPLPIRRSN SVTNSPHQPP HPDPSSLIYP
101: FGSSGRGFPT RPVRQNSNSV ADPVGSPSPG GYTPRGPVYG YHHGQFVSNL DPMNQFMRAA HPQNQQSPQL GSGHMKGVPH FLQPRATPSP TSILDNSGHK
201: KARSRDDALV LVRKRKVRIT EGASLYSLCR SWLRNGAHEG IKPQRIDMMT CLPKPLPVDK TETSLPKDLV EEAICEEDKE DEESVKHLSE SDLLKRHIDR
301: AKKVRARLRE ERLKRIARYK ARLALLLPPF GEQCRNE

Arabidopsis Description

Proline-rich family protein [Source:UniProtKB/TrEMBL;Acc:Q8GYK6]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.