Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, extracellular
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 1
- extracellular 4
- endoplasmic reticulum 4
- vacuole 3
- plasma membrane 3
- golgi 3
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr6P06320_001 | Banana | nucleus | 39.88 | 64.49 |
| VIT_13s0156g00270.t01 | Wine grape | cytosol | 33.53 | 45.67 |
| KRH43426 | Soybean | cytosol | 42.77 | 27.31 |
| KRH13875 | Soybean | cytosol, nucleus, plastid | 42.77 | 25.69 |
| EER92590 | Sorghum | plastid | 43.35 | 24.27 |
| CDY12159 | Canola | nucleus, plastid | 39.31 | 22.9 |
| CDY52552 | Canola | nucleus, plastid | 38.73 | 22.79 |
| Bra005553.1-P | Field mustard | nucleus, plastid | 39.31 | 22.74 |
| AT2G32840.1 | Thale cress | nucleus, plastid | 42.77 | 21.96 |
| CDY18271 | Canola | plastid | 36.99 | 21.55 |
| Zm00001d047985_P002 | Maize | plastid | 42.77 | 20.27 |
| TraesCS4A01G076800.1 | Wheat | plastid | 43.93 | 20.21 |
| TraesCS4D01G234100.1 | Wheat | plastid | 43.93 | 20.16 |
| Bra015366.1-P | Field mustard | nucleus, plastid | 38.73 | 19.82 |
| TraesCS4B01G232900.1 | Wheat | plastid | 43.35 | 19.79 |
| Solyc01g073920.2.1 | Tomato | cytosol, plastid | 38.15 | 19.3 |
| CDX89775 | Canola | plastid | 37.57 | 19.23 |
| HORVU4Hr1G064990.1 | Barley | plastid | 42.2 | 18.67 |
| Os03t0234600-00 | Rice | plastid | 25.43 | 16.6 |
| AT1G04930.2 | Thale cress | nucleus, plastid | 32.37 | 15.47 |
| PGSC0003DMT400016192 | Potato | nucleus, plastid | 20.81 | 12.59 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr7P11350_001 | EnsemblPlants:GSMUA_Achr7T11350_001 | EnsemblPlantsGene:GSMUA_Achr7G11350_001 | PANTHER:PTHR37173 | SEG:seg | SignalP:SignalP-noTM |
| UniParc:UPI000296DB13 | UniProt:M0TGM3 | MapMan:35.2 | : | : | : |
Description
transposon protein, putative, unclassified, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr7G11350_001]
Coordinates
chr7:+:9056208..9060696
Molecular Weight (calculated)
20089.3 Da
IEP (calculated)
7.457
GRAVY (calculated)
-0.557
Length
173 amino acids
Sequence
(BLAST)
(BLAST)
001: MLRSGKWQIP LFLYVFVFLP ASTDRTELCR NKIREDDIFM INDRKVRVLD GCTPSLYSLC RSWVRNGQSH EIQSNFGDAE KLLPRPLPAS MIDSQVMKQH
101: ENDAEAEVIE EEEPVGSVEE LSERDLLEIH IKHAKSVRAR LRKERLRRIE RCKQRLALLL PPPSELGRNE TAP
101: ENDAEAEVIE EEEPVGSVEE LSERDLLEIH IKHAKSVRAR LRKERLRRIE RCKQRLALLL PPPSELGRNE TAP
001: MSTPDPNPNP NPNPSVSVAV STPIVTASES PVTQPNTVIT PSSQPQPQTP ASSYRAIAPL HRHHPHQNIY TNPLPIRRSN SVTNSPHQPP HPDPSSLIYP
101: FGSSGRGFPT RPVRQNSNSV ADPVGSPSPG GYTPRGPVYG YHHGQFVSNL DPMNQFMRAA HPQNQQSPQL GSGHMKGVPH FLQPRATPSP TSILDNSGHK
201: KARSRDDALV LVRKRKVRIT EGASLYSLCR SWLRNGAHEG IKPQRIDMMT CLPKPLPVDK TETSLPKDLV EEAICEEDKE DEESVKHLSE SDLLKRHIDR
301: AKKVRARLRE ERLKRIARYK ARLALLLPPF GEQCRNE
101: FGSSGRGFPT RPVRQNSNSV ADPVGSPSPG GYTPRGPVYG YHHGQFVSNL DPMNQFMRAA HPQNQQSPQL GSGHMKGVPH FLQPRATPSP TSILDNSGHK
201: KARSRDDALV LVRKRKVRIT EGASLYSLCR SWLRNGAHEG IKPQRIDMMT CLPKPLPVDK TETSLPKDLV EEAICEEDKE DEESVKHLSE SDLLKRHIDR
301: AKKVRARLRE ERLKRIARYK ARLALLLPPF GEQCRNE
Arabidopsis Description
Proline-rich family protein [Source:UniProtKB/TrEMBL;Acc:Q8GYK6]
SUBAcon: [plastid,nucleus]
SUBAcon: [plastid,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.