CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

nucleus 2
plastid 2
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG91959
KRG93305
KRG96437
KRG97647
KRH02922
KRH04403
KRH07953
KRH08190
KRH14870
KRH16959
KRH18975
KRH23958
KRH24392
KRH28715
KRH29374
KRH31225
KRH31878
KRH34817
KRH39841
KRH51475
KRH53667
KRH53884
KRH53956
KRH56614
KRH60786
KRH63981
KRH64060
KRH64261
KRH69706
KRH69884
KRH71566
KRH73215
KRH76747

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G32840.1	KRG96437	AT2G47710.1	21798944
AT2G32840.1	KRH31878	AT2G47710.1	21798944
AT2G32840.1	KRH71566	AT2G47710.1	21798944
AT2G32840.1	KRG93305	AT3G27960.1	21798944
AT2G32840.1	KRH56614	AT3G27960.1	21798944
AT2G32840.1	KRH16959	AT3G49580.1	21798944
AT2G32840.1	KRH53667	AT3G49580.1	21798944
AT2G32840.1	KRH64261	AT3G49580.1	21798944
AT2G32840.1	KRH08190	AT3G50910.1	21798944
AT2G32840.1	KRH28715	AT3G50910.1	21798944
AT2G32840.1	KRH69884	AT3G50910.1	21798944
AT2G32840.1	KRH76747	AT3G50910.1	21798944
AT2G32840.1	KRG91959	AT3G54850.1	21798944
AT2G32840.1	KRH04403	AT3G54850.1	21798944
AT2G32840.1	KRH34817	AT3G54850.1	21798944
AT2G32840.1	KRG97647	AT3G56270.1	21798944
AT2G32840.1	KRH14870	AT3G56270.1	21798944
AT2G32840.1	KRH31225	AT3G56270.1	21798944
AT2G32840.1	KRH73215	AT3G56270.1	21798944
AT2G32840.1	KRH53884	AT4G00120.1	21798944
AT2G32840.1	KRH64060	AT4G00120.1	21798944
AT2G32840.1	KRH23958	AT4G25200.1	21798944
AT2G32840.1	KRH39841	AT4G25200.1	21798944
AT2G32840.1	KRH02922	AT4G30330.1	21798944
AT2G32840.1	KRH18975	AT4G30330.1	21798944
AT2G32840.1	KRH53956	AT4G30330.1	21798944
AT2G32840.1	KRH63981	AT4G30330.1	21798944
AT2G32840.1	KRH24392	AT4G39050.1	21798944
AT2G32840.1	KRH29374	AT4G39050.1	21798944
AT2G32840.1	KRH51475	AT4G39050.1	21798944
AT2G32840.1	KRH60786	AT4G39050.1	21798944
AT2G32840.1	KRH07953	AT5G11980.1	21798944
AT2G32840.1	KRH69706	AT5G11980.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH43426	Soybean	cytosol	79.86	84.87
VIT_13s0156g00270.t01	Wine grape	cytosol	20.14	45.67
GSMUA_Achr7P11350_001	Banana	endoplasmic reticulum, extracellular	25.69	42.77
GSMUA_Achr6P06320_001	Banana	nucleus	12.85	34.58
CDY12159	Canola	nucleus, plastid	31.94	30.98
CDY52552	Canola	nucleus, plastid	31.25	30.61
Bra005553.1-P	Field mustard	nucleus, plastid	31.6	30.43
CDY18271	Canola	plastid	28.82	27.95
AT2G32840.1	Thale cress	nucleus, plastid	32.29	27.6
Bra015366.1-P	Field mustard	nucleus, plastid	31.6	26.92
Solyc01g073920.2.1	Tomato	cytosol, plastid	31.94	26.9
CDX89775	Canola	plastid	30.56	26.04
EER92590	Sorghum	plastid	26.74	24.92
TraesCS4D01G234100.1	Wheat	plastid	31.6	24.14
TraesCS4B01G232900.1	Wheat	plastid	30.9	23.48
TraesCS4A01G076800.1	Wheat	plastid	30.56	23.4
Os03t0234600-00	Rice	plastid	21.18	23.02
HORVU4Hr1G064990.1	Barley	plastid	30.21	22.25
AT1G04930.2	Thale cress	nucleus, plastid	27.43	21.82
Zm00001d047985_P002	Maize	plastid	26.04	20.55
PGSC0003DMT400016192	Potato	nucleus, plastid	19.1	19.23

Protein Annotations

EMBL:ACUP02009794	EnsemblPlants:KRH13875	EnsemblPlantsGene:GLYMA_15G269200	EntrezGene:100779268	GO:GO:0005575	GO:GO:0007049
GO:GO:0008150	GO:GO:0009987	GO:GO:0017053	InterPro:LIN37	ncoils:Coil	PANTHER:PTHR37173
PFAM:PF15306	ProteinID:KRH13875	ProteinID:KRH13875.1	SEG:seg	UniParc:UPI0003DE9E04	UniProt:A0A0R0GDX5
MapMan:35.2	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr15:-:50607854..50621643

Molecular Weight (calculated)

31984.0 Da

IEP (calculated)

9.922

GRAVY (calculated)

-0.636

Length

288 amino acids

Sequence
(BLAST)

001: MPLDPAAATT TASRPISPLP QPQQQHHHHY PSQQQTLPIL APNPHFVYPF APKGVRAADH AGVSAAFPPP SMMYSGGVRG VPLDYFSHAL HVGRPPTHVP
101: FPHAAPAASP PVKKAAARSA VADVNGGKDT NTREKSSEDT FIVVRDRKVR VTDDASLYAL CRSWLRNGIN EESQLLSFAF YSLAALTEPQ QKDVIKALPK
201: PLPASMVASY LSNKKEDEKD EDEKEENEQS VEHLSPQDLL KRHIKRAKNV RARLREERLQ RITRYRSRLR LLLPPAIEQC RNDTAAGN

Best Arabidopsis Sequence Match ( AT2G32840.1 )
(BLAST)

001: MSTPDPNPNP NPNPSVSVAV STPIVTASES PVTQPNTVIT PSSQPQPQTP ASSYRAIAPL HRHHPHQNIY TNPLPIRRSN SVTNSPHQPP HPDPSSLIYP
101: FGSSGRGFPT RPVRQNSNSV ADPVGSPSPG GYTPRGPVYG YHHGQFVSNL DPMNQFMRAA HPQNQQSPQL GSGHMKGVPH FLQPRATPSP TSILDNSGHK
201: KARSRDDALV LVRKRKVRIT EGASLYSLCR SWLRNGAHEG IKPQRIDMMT CLPKPLPVDK TETSLPKDLV EEAICEEDKE DEESVKHLSE SDLLKRHIDR
301: AKKVRARLRE ERLKRIARYK ARLALLLPPF GEQCRNE

Arabidopsis Description

Proline-rich family protein [Source:UniProtKB/TrEMBL;Acc:Q8GYK6]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.