Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- plastid 4
- cytosol 1
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY18271 | Canola | plastid | 45.03 | 54.88 |
| CDX89775 | Canola | plastid | 49.72 | 53.25 |
| Bra015366.1-P | Field mustard | nucleus, plastid | 46.69 | 50.0 |
| AT2G32840.1 | Thale cress | nucleus, plastid | 38.67 | 41.54 |
| VIT_13s0156g00270.t01 | Wine grape | cytosol | 14.09 | 40.16 |
| GSMUA_Achr7P11350_001 | Banana | endoplasmic reticulum, extracellular | 15.47 | 32.37 |
| KRH43426 | Soybean | cytosol | 23.2 | 31.0 |
| GSMUA_Achr6P06320_001 | Banana | nucleus | 8.56 | 28.97 |
| KRH13875 | Soybean | cytosol, nucleus, plastid | 21.82 | 27.43 |
| Solyc01g073920.2.1 | Tomato | cytosol, plastid | 24.59 | 26.02 |
| EER92590 | Sorghum | plastid | 18.78 | 22.01 |
| TraesCS4D01G234100.1 | Wheat | plastid | 22.38 | 21.49 |
| TraesCS4A01G076800.1 | Wheat | plastid | 21.82 | 21.01 |
| TraesCS4B01G232900.1 | Wheat | plastid | 21.82 | 20.84 |
| HORVU4Hr1G064990.1 | Barley | plastid | 21.27 | 19.69 |
| Zm00001d047985_P002 | Maize | plastid | 18.51 | 18.36 |
| Os03t0234600-00 | Rice | plastid | 13.26 | 18.11 |
| PGSC0003DMT400016192 | Potato | nucleus, plastid | 13.81 | 17.48 |
Protein Annotations
| MapMan:35.2 | EntrezGene:839377 | ProteinID:AEE27761.1 | ArrayExpress:AT1G04930 | EnsemblPlantsGene:AT1G04930 | RefSeq:AT1G04930 |
| TAIR:AT1G04930 | RefSeq:AT1G04930-TAIR-G | EnsemblPlants:AT1G04930.2 | TAIR:AT1G04930.2 | Unigene:At.42424 | ncoils:Coil |
| UniProt:F4I764 | GO:GO:0005575 | GO:GO:0007049 | GO:GO:0008150 | GO:GO:0009987 | GO:GO:0017053 |
| InterPro:LIN37 | RefSeq:NP_001184909.1 | PFAM:PF15306 | PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 |
| PO:PO:0001078 | PO:PO:0001081 | PO:PO:0004507 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0009005 |
| PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 |
| PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020100 | PO:PO:0025022 | PANTHER:PTHR37173 |
| UniParc:UPI0001E92C56 | SEG:seg | : | : | : | : |
Description
Hydroxyproline-rich glycoprotein family protein [Source:UniProtKB/TrEMBL;Acc:F4I764]
Coordinates
chr1:-:1396291..1399053
Molecular Weight (calculated)
40093.6 Da
IEP (calculated)
10.438
GRAVY (calculated)
-0.751
Length
362 amino acids
Sequence
(BLAST)
(BLAST)
001: MSIPDPNSSA SLTVSPSLST ASETPVTPVN TVRPPPSQPP PAPPPLPPPT YRPIAPLRHP NPFQQQSAYS NNLYAHSIPV RRQIQDPSAV LYPFALPGRG
101: FSARPVRGFV ADPSVTAGNL SGYPPRPSFT YDPGPYEQRQ MESLLQQFIR ERNPQIRPLP RLGLGSPVGL GPIRASPQFL QPRLSSGKIS GENARDDPKF
201: LDWSLSRTES DCTVAPPPTS ILDTSRNRKA RSKDGALAVV RGRKVRITEG SSSLYSLGRS WLKNGAHVGI QPQRSGIMKP LPKPLPVDLT TETSVPDDPD
301: EESADEDKED EEAVKQLSEK DLLKRHIERA KKVRAQLREE RSRRIRRYKE RITLILAQSE DR
101: FSARPVRGFV ADPSVTAGNL SGYPPRPSFT YDPGPYEQRQ MESLLQQFIR ERNPQIRPLP RLGLGSPVGL GPIRASPQFL QPRLSSGKIS GENARDDPKF
201: LDWSLSRTES DCTVAPPPTS ILDTSRNRKA RSKDGALAVV RGRKVRITEG SSSLYSLGRS WLKNGAHVGI QPQRSGIMKP LPKPLPVDLT TETSVPDDPD
301: EESADEDKED EEAVKQLSEK DLLKRHIERA KKVRAQLREE RSRRIRRYKE RITLILAQSE DR
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.