Factsheet for VIT_13s0156g00270.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
mitochondrion 2
cytosol 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	mitochondrion
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_03s0038g00350.t01
VIT_04s0008g01350.t01
VIT_04s0023g02110.t01
VIT_04s0044g01040.t01
VIT_07s0005g00290.t01
VIT_07s0005g00420.t01
VIT_13s0019g04710.t01
VIT_13s0067g02400.t01
VIT_14s0066g01280.t01
VIT_16s0022g00510.t01
VIT_16s0098g00600.t01
VIT_17s0000g03570.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G32840.1	VIT_07s0005g00420.t01	AT2G47700.1	21798944
AT2G32840.1	VIT_07s0005g00290.t01	AT2G47710.1	21798944
AT2G32840.1	VIT_14s0066g01280.t01	AT3G27960.1	21798944
AT2G32840.1	VIT_16s0098g00600.t01	AT3G49580.1	21798944
AT2G32840.1	VIT_04s0023g02110.t01	AT3G50910.1	21798944
AT2G32840.1	VIT_13s0019g04710.t01	AT3G54850.1	21798944
AT2G32840.1	VIT_13s0067g02400.t01	AT3G56270.1	21798944
AT2G32840.1	VIT_04s0044g01040.t01	AT4G00120.1	21798944
AT2G32840.1	VIT_16s0022g00510.t01	AT4G25200.1	21798944
AT2G32840.1	VIT_17s0000g03570.t01	AT4G30330.1	21798944
AT2G32840.1	VIT_03s0038g00350.t01	AT4G39050.1	21798944
AT2G32840.1	VIT_04s0008g01350.t01	AT5G11980.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr6P06320_001	Banana	nucleus	29.92	35.51
GSMUA_Achr7P11350_001	Banana	endoplasmic reticulum, extracellular	45.67	33.53
KRH43426	Soybean	cytosol	44.88	21.03
KRH13875	Soybean	cytosol, nucleus, plastid	45.67	20.14
AT2G32840.1	Thale cress	nucleus, plastid	51.18	19.29
Bra005553.1-P	Field mustard	nucleus, plastid	43.31	18.39
CDY52552	Canola	nucleus, plastid	42.52	18.37
CDY12159	Canola	nucleus, plastid	41.73	17.85
Solyc01g073920.2.1	Tomato	cytosol, plastid	48.03	17.84
CDY18271	Canola	plastid	40.16	17.17
CDX89775	Canola	plastid	40.94	15.38
Bra015366.1-P	Field mustard	nucleus, plastid	40.94	15.38
AT1G04930.2	Thale cress	nucleus, plastid	40.16	14.09
PGSC0003DMT400016192	Potato	nucleus, plastid	30.71	13.64
EER92590	Sorghum	plastid	30.71	12.62
Zm00001d047985_P002	Maize	plastid	33.07	11.51
TraesCS4A01G076800.1	Wheat	plastid	33.07	11.17
TraesCS4D01G234100.1	Wheat	plastid	33.07	11.14
TraesCS4B01G232900.1	Wheat	plastid	33.07	11.08
HORVU4Hr1G064990.1	Barley	plastid	33.86	11.0
Os03t0234600-00	Rice	plastid	14.17	6.79

Protein Annotations

ArrayExpress:VIT_13s0156g00270	EMBL:FN596003	EnsemblPlants:VIT_13s0156g00270.t01	EnsemblPlantsGene:VIT_13s0156g00270	GO:GO:0005575	GO:GO:0007049
GO:GO:0008150	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0017053	InterPro:LIN37
ncoils:Coil	PANTHER:PTHR37173	PFAM:PF15306	ProteinID:CCB56691	ProteinID:CCB56691.1	SEG:seg
UniParc:UPI0002108013	UniProt:F6HPT5	MapMan:35.2	:	:	:

Description

No Description!

Coordinates

chr13:-:24032466..24038498

Molecular Weight (calculated)

14373.3 Da

IEP (calculated)

10.662

GRAVY (calculated)

-1.072

Length

127 amino acids

Sequence
(BLAST)

001: MEMQGSGRTA GGIEVQDGAG RAWRGVGSGR KPQHYDSMKS LPRPLPIPVT DPNLPKKKED DEEEEDEGSV ENLLPQDLLQ RHIKRAKKVR ARLREQRLKR
101: IARYKTRLAL LLPPPVERFR NDTGAGN

Best Arabidopsis Sequence Match ( AT2G32840.1 )
(BLAST)

001: MSTPDPNPNP NPNPSVSVAV STPIVTASES PVTQPNTVIT PSSQPQPQTP ASSYRAIAPL HRHHPHQNIY TNPLPIRRSN SVTNSPHQPP HPDPSSLIYP
101: FGSSGRGFPT RPVRQNSNSV ADPVGSPSPG GYTPRGPVYG YHHGQFVSNL DPMNQFMRAA HPQNQQSPQL GSGHMKGVPH FLQPRATPSP TSILDNSGHK
201: KARSRDDALV LVRKRKVRIT EGASLYSLCR SWLRNGAHEG IKPQRIDMMT CLPKPLPVDK TETSLPKDLV EEAICEEDKE DEESVKHLSE SDLLKRHIDR
301: AKKVRARLRE ERLKRIARYK ARLALLLPPF GEQCRNE

Arabidopsis Description

Proline-rich family protein [Source:UniProtKB/TrEMBL;Acc:Q8GYK6]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.