Factsheet for VIT_13s0067g02400.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_05s0020g04420.t01
VIT_06s0009g01910.t01
VIT_08s0040g00470.t01
VIT_12s0028g01210.t01
VIT_14s0108g00940.t01
VIT_16s0100g00530.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G56270.1	VIT_12s0028g01210.t01	AT2G04630.1	21798944
AT3G56270.1	VIT_16s0100g00530.t01	AT2G04630.1	21798944
AT3G56270.1	VIT_06s0009g01910.t01	AT2G41090.1	17360592
AT3G56270.1	VIT_08s0040g00470.t01	AT2G41090.1	17360592
AT3G56270.1	VIT_06s0009g01910.t01	AT2G41100.1	17360592
AT3G56270.1	VIT_08s0040g00470.t01	AT2G41100.1	17360592
AT3G56270.1	VIT_14s0108g00940.t01	AT3G01180.1	21798944
AT3G56270.1	VIT_05s0020g04420.t01	AT4G14640.1	17360592
AT3G56270.1	VIT_06s0009g01910.t01	AT5G21274.1	17360592
AT3G56270.1	VIT_08s0040g00470.t01	AT5G21274.1	17360592

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX93176	Canola	cytosol	31.09	43.01
Bra000190.1-P	Field mustard	nucleus	35.77	40.3
CDY07602	Canola	nucleus	35.77	40.3
CDY24901	Canola	cytosol	35.77	40.3
Bra016990.1-P	Field mustard	cytosol	33.33	39.38
CDY06986	Canola	cytosol	33.33	39.38
KRH31225	Soybean	cytosol	40.64	38.75
GSMUA_Achr3P09860_001	Banana	nucleus	30.15	38.61
AT2G40480.1	Thale cress	cytosol	37.08	38.22
PGSC0003DMT400074781	Potato	nucleus	35.02	37.55
GSMUA_Achr8P21300_001	Banana	nucleus	29.78	37.15
KRG97647	Soybean	plastid	38.95	37.14
Solyc06g050350.2.1	Tomato	nucleus	35.21	36.22
AT3G56270.1	Thale cress	cytosol	28.46	34.08
KRH73215	Soybean	cytosol	35.39	33.99
Os07t0677900-01	Rice	nucleus	32.4	33.33
Os03t0339700-01	Rice	nucleus	33.71	33.09
KRH14870	Soybean	nucleus	36.14	32.88
EER92305	Sorghum	nucleus	33.15	32.48
CDX72151	Canola	cytosol	25.28	31.99
Zm00001d007164_P001	Maize	nucleus	32.77	31.59
TraesCS2A01G106600.1	Wheat	nucleus	35.58	31.46
EER97734	Sorghum	nucleus	33.71	31.14
Zm00001d047516_P001	Maize	nucleus	31.27	30.64
GSMUA_Achr8P02810_001	Banana	mitochondrion	29.78	30.0
TraesCS2D01G107200.1	Wheat	nucleus	34.46	29.58
HORVU2Hr1G018380.4	Barley	nucleus	35.39	29.49
TraesCS2B01G124200.1	Wheat	nucleus	34.46	29.35
Os05t0476100-01	Rice	cytosol, nucleus, plastid	30.52	28.8
VIT_08s0058g01020.t01	Wine grape	cytosol	45.13	28.66
Bra007233.1-P	Field mustard	cytosol	25.28	28.24
TraesCS1B01G309200.1	Wheat	cytosol	28.84	28.1
CDY27228	Canola	cytosol	25.09	28.03
TraesCS1A01G299400.1	Wheat	cytosol	28.46	27.64
TraesCS1D01G298300.1	Wheat	nucleus	28.84	27.5
Zm00001d010610_P001	Maize	cytosol	26.59	25.49
HORVU1Hr1G070120.3	Barley	nucleus	28.46	24.6
OQU78181	Sorghum	nucleus	23.41	9.07

Protein Annotations

EntrezGene:100267312	wikigene:100267312	MapMan:35.1	ProteinID:CCB49812	ProteinID:CCB49812.1	ncoils:Coil
UniProt:F6HC54	EMBL:FN595514	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005829	GO:GO:0008150	GO:GO:0009903	GO:GO:0009904	GO:GO:0009987	GO:GO:0016043
EntrezGene:LOC100267312	wikigene:LOC100267312	PFAM:PF05701	PANTHER:PTHR32054	PANTHER:PTHR32054:SF13	UniParc:UPI0001984682
ArrayExpress:VIT_13s0067g02400	EnsemblPlantsGene:VIT_13s0067g02400	EnsemblPlants:VIT_13s0067g02400.t01	InterPro:Web	RefSeq:XP_002274327	RefSeq:XP_002274327.1
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr13:+:1320574..1322637

Molecular Weight (calculated)

59302.0 Da

IEP (calculated)

8.457

GRAVY (calculated)

-0.636

Length

534 amino acids

Sequence
(BLAST)

001: MDKLRDFAPR GGLDSGFGKC DSSMKVGHGG DEIPVPETKK VECRAEIDTS PPFGSVEEAV TRFGGRGFWI PLHKLGDAYH GIEEVDINKV EQQAAELEKD
101: LMAKQQETLD VLKELEATKR FVEDLRLKLQ ILDLHADDQK ISASPPAAIK EMNKENSGSS TAASTLNHPG NSSPDLILME LKQAKLNLSK TTNDLAVIRD
201: SVESLNRKMK QEKSSLEKNQ ENMVINSRMR PQAALSLEGK GGFENPTNIS RELQQLNSEA EQFIKMAEAA KFEVLRAMSG IEQTKTSMKT AEMRWVAAKK
301: MEEAARAAEA VALAEIRALS GGSEASSGVF MQKPEGITLS FRDYSSIVSN SQRTDDMTPR KKAVDHPMIL KKLEEATEEV AVSKNALEEA LNRVETANRR
401: KLAVEEALQR LKMDHHHDQR CRPVQNSQLF NGDTRPVLRP SISIGDALSR KLMIPEEFGV REGHKKVSLS QMLHKQSGAL SPPPRPPPPA TASEKEDEID
501: LKQYFAKSRK FGFIHLSLPM AKQSKKKMQA ANLR

Best Arabidopsis Sequence Match ( AT2G40480.1 )
(BLAST)

001: MALAEEQHQN YHVAEAIPGT PGIHDVRIQP GSENSGFCVD PVGVSNVPGI RRVGLRAEID TSPPFGSVQE AVTRFGGRGY WVPFKLDDTF NGEFDIKRME
101: EHAAELEKDL IVKELETLDV LEALGSTKRI VEDLKRQLQQ EALRCSDQLS SDIKEMNDEH CHHNPMSSPD LILMELKQAK MNLGKTMDNL VVIQSSVESL
201: NKKMKEEKDF LEKTRAKLTY GFGGPVSLAE ELSRIKVKPQ VQDEPLREQV KMVAEADETG LNLQNKNSLR TAEMRLVAAR KMEEAAKAAE ALAIAEITML
301: SSNGESQDDD SEFCFPEPPR SPVTPRGLRI DNDFSTDKSS RRGILKKLEE ATEGVKQSKQ ALEAALNRVE IANVKQLAAE NAFRGWTKDS LKGDNFTPLN
401: HTRRSFFSHL NKHHEPLDIL PKPVLKSNIS MRDVLRRKQV PKEDVVAPQR QSLEGQIPRR NVNLSQMLKE LKQDVKFSAR GEKEEVHEEK QYVTQRRKFG
501: FIHITLPLQK QSKKKSSL

Arabidopsis Description

WEB family protein At2g40480 [Source:UniProtKB/Swiss-Prot;Acc:Q5XVC7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.