Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2B01G124200.1 | Wheat | nucleus | 86.26 | 83.09 |
| TraesCS2D01G107200.1 | Wheat | nucleus | 85.1 | 82.64 |
| HORVU2Hr1G018380.4 | Barley | nucleus | 80.63 | 75.97 |
| Zm00001d007164_P001 | Maize | nucleus | 57.45 | 62.64 |
| Os07t0677900-01 | Rice | nucleus | 53.81 | 62.62 |
| EER97734 | Sorghum | nucleus | 59.44 | 62.11 |
| GSMUA_Achr8P21300_001 | Banana | nucleus | 32.12 | 45.33 |
| GSMUA_Achr3P09860_001 | Banana | nucleus | 30.79 | 44.6 |
| KRH65464 | Soybean | nucleus | 40.73 | 43.93 |
| KRH76097 | Soybean | nucleus | 40.4 | 43.65 |
| KRH00407 | Soybean | nucleus | 37.42 | 39.51 |
| KRG94824 | Soybean | cytosol | 31.13 | 39.33 |
| PGSC0003DMT400068339 | Potato | nucleus | 36.76 | 38.95 |
| Solyc09g042710.2.1 | Tomato | nucleus | 36.59 | 38.57 |
| AT3G51720.1 | Thale cress | nucleus | 25.5 | 37.84 |
| KRH40785 | Soybean | nucleus | 30.46 | 37.55 |
| CDX78029 | Canola | nucleus | 24.34 | 35.85 |
| CDX73702 | Canola | nucleus | 24.5 | 35.84 |
| Bra036780.1-P | Field mustard | nucleus | 24.17 | 35.61 |
| VIT_13s0067g02400.t01 | Wine grape | nucleus | 31.46 | 35.58 |
| CDY70507 | Canola | cytosol, nucleus, plastid | 25.5 | 35.57 |
| CDY18389 | Canola | nucleus | 28.97 | 34.65 |
| CDY07266 | Canola | cytosol, mitochondrion | 9.27 | 34.57 |
| Bra017122.1-P | Field mustard | nucleus | 28.97 | 34.52 |
| CDX93176 | Canola | cytosol | 22.02 | 34.46 |
| CDY07733 | Canola | cytosol | 18.87 | 34.03 |
| Bra000057.1-P | Field mustard | nucleus | 27.48 | 34.02 |
| AT2G38370.2 | Thale cress | nucleus | 30.13 | 33.77 |
| CDY04348 | Canola | nucleus | 15.23 | 33.33 |
| TraesCS1A01G299400.1 | Wheat | cytosol | 29.97 | 32.91 |
| PGSC0003DMT400074781 | Potato | nucleus | 26.99 | 32.73 |
| CDY65893 | Canola | nucleus | 26.82 | 32.66 |
| Solyc06g050350.2.1 | Tomato | nucleus | 27.15 | 31.6 |
| KRH31225 | Soybean | cytosol | 28.81 | 31.07 |
| CDY24901 | Canola | cytosol | 24.34 | 31.01 |
| Bra000190.1-P | Field mustard | nucleus | 24.34 | 31.01 |
| CDY07602 | Canola | nucleus | 24.34 | 31.01 |
| CDY06986 | Canola | cytosol | 22.85 | 30.53 |
| Bra016990.1-P | Field mustard | cytosol | 22.85 | 30.53 |
| KRG97647 | Soybean | plastid | 27.98 | 30.18 |
| CDY58310 | Canola | nucleus | 13.08 | 29.81 |
| CDY11490 | Canola | nucleus | 13.08 | 29.81 |
| CDY19552 | Canola | mitochondrion | 9.77 | 29.5 |
| VIT_08s0058g01020.t01 | Wine grape | cytosol | 41.06 | 29.49 |
| CDY70964 | Canola | cytosol | 8.28 | 28.74 |
| AT2G40480.1 | Thale cress | cytosol | 24.5 | 28.57 |
| AT3G56270.1 | Thale cress | cytosol | 21.03 | 28.48 |
| KRH73215 | Soybean | cytosol | 26.16 | 28.42 |
| KRH14870 | Soybean | nucleus | 26.82 | 27.6 |
| CDX72151 | Canola | cytosol | 18.71 | 26.78 |
| Bra007760.1-P | Field mustard | nucleus | 12.91 | 24.3 |
| CDY27228 | Canola | cytosol | 18.71 | 23.64 |
| Bra007233.1-P | Field mustard | cytosol | 18.71 | 23.64 |
| Bra039972.1-P | Field mustard | cytosol | 8.77 | 21.2 |
| CDY12396 | Canola | cytosol, endoplasmic reticulum, nucleus | 10.26 | 18.4 |
Protein Annotations
| EnsemblPlants:TraesCS2A01G106600.1 | EnsemblPlantsGene:TraesCS2A01G106600 | InterPro:Web | ncoils:Coil | PANTHER:PTHR32054 | PANTHER:PTHR32054:SF4 |
| PFAM:PF05701 | SEG:seg | MapMan:35.1 | : | : | : |
Description
No Description!
Coordinates
chr2A:-:58672142..58674266
Molecular Weight (calculated)
66570.3 Da
IEP (calculated)
5.290
GRAVY (calculated)
-0.683
Length
604 amino acids
Sequence
(BLAST)
(BLAST)
001: MEEEARPPLL PVRIPMNGED LAPAAPGACA VGGGRAEIDT SAPFESVREA VDRFGGSAAW SSHLVNRIFA HHKKQNQTVC MGTEDEQCAN LAEQTAQIEK
101: ELGAKERETL DVLKQLESAK RIIADLKLKI QKKTAEDALQ AEEEKQQHPE SNCSLTQLST AEPEVKQPEG NAEAAEEVQI TEPEVKQQPE ENANSGADVD
201: MCAGLDEQEQ QQQHPNLVLM ELEQAKSNLN RTTGDLAAIR ASIESLRHDI ATEKVLVERS RAKVSSDATL VSSLKEELDQ TTKKLQTLKD LQRRREDPSD
301: IFFEIKRMTS EIEQLRNAAN ASKSEAMMLA AEIEQTKATI GTAEVRCLAA KKMEEAARAA EALALAEIKA LLCSEASAED LQGTDGVILS VEEYSELASK
401: AREVDESSRN KIAAAMVHVD EANQSKSESL TRLEEAKMEV EECKKALQEA LKRVETANRR KFAVEETLRR CRSETGHKRR SFRGSPKFKT AAHRHRDDSH
501: CMDIVDVSDN SMKPTLSIGQ ILSMKLMGPD GYDKSVSDDT STSETSSVSL GQILNRRQAI LTYSSDTSAN KKFSGKRKKF AFTGLSVFLA KQAKSKKKRG
601: SDEN
101: ELGAKERETL DVLKQLESAK RIIADLKLKI QKKTAEDALQ AEEEKQQHPE SNCSLTQLST AEPEVKQPEG NAEAAEEVQI TEPEVKQQPE ENANSGADVD
201: MCAGLDEQEQ QQQHPNLVLM ELEQAKSNLN RTTGDLAAIR ASIESLRHDI ATEKVLVERS RAKVSSDATL VSSLKEELDQ TTKKLQTLKD LQRRREDPSD
301: IFFEIKRMTS EIEQLRNAAN ASKSEAMMLA AEIEQTKATI GTAEVRCLAA KKMEEAARAA EALALAEIKA LLCSEASAED LQGTDGVILS VEEYSELASK
401: AREVDESSRN KIAAAMVHVD EANQSKSESL TRLEEAKMEV EECKKALQEA LKRVETANRR KFAVEETLRR CRSETGHKRR SFRGSPKFKT AAHRHRDDSH
501: CMDIVDVSDN SMKPTLSIGQ ILSMKLMGPD GYDKSVSDDT STSETSSVSL GQILNRRQAI LTYSSDTSAN KKFSGKRKKF AFTGLSVFLA KQAKSKKKRG
601: SDEN
001: MALAEEQHQN YHVAEAIPGT PGIHDVRIQP GSENSGFCVD PVGVSNVPGI RRVGLRAEID TSPPFGSVQE AVTRFGGRGY WVPFKLDDTF NGEFDIKRME
101: EHAAELEKDL IVKELETLDV LEALGSTKRI VEDLKRQLQQ EALRCSDQLS SDIKEMNDEH CHHNPMSSPD LILMELKQAK MNLGKTMDNL VVIQSSVESL
201: NKKMKEEKDF LEKTRAKLTY GFGGPVSLAE ELSRIKVKPQ VQDEPLREQV KMVAEADETG LNLQNKNSLR TAEMRLVAAR KMEEAAKAAE ALAIAEITML
301: SSNGESQDDD SEFCFPEPPR SPVTPRGLRI DNDFSTDKSS RRGILKKLEE ATEGVKQSKQ ALEAALNRVE IANVKQLAAE NAFRGWTKDS LKGDNFTPLN
401: HTRRSFFSHL NKHHEPLDIL PKPVLKSNIS MRDVLRRKQV PKEDVVAPQR QSLEGQIPRR NVNLSQMLKE LKQDVKFSAR GEKEEVHEEK QYVTQRRKFG
501: FIHITLPLQK QSKKKSSL
101: EHAAELEKDL IVKELETLDV LEALGSTKRI VEDLKRQLQQ EALRCSDQLS SDIKEMNDEH CHHNPMSSPD LILMELKQAK MNLGKTMDNL VVIQSSVESL
201: NKKMKEEKDF LEKTRAKLTY GFGGPVSLAE ELSRIKVKPQ VQDEPLREQV KMVAEADETG LNLQNKNSLR TAEMRLVAAR KMEEAAKAAE ALAIAEITML
301: SSNGESQDDD SEFCFPEPPR SPVTPRGLRI DNDFSTDKSS RRGILKKLEE ATEGVKQSKQ ALEAALNRVE IANVKQLAAE NAFRGWTKDS LKGDNFTPLN
401: HTRRSFFSHL NKHHEPLDIL PKPVLKSNIS MRDVLRRKQV PKEDVVAPQR QSLEGQIPRR NVNLSQMLKE LKQDVKFSAR GEKEEVHEEK QYVTQRRKFG
501: FIHITLPLQK QSKKKSSL
Arabidopsis Description
WEB family protein At2g40480 [Source:UniProtKB/Swiss-Prot;Acc:Q5XVC7]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.