CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
EER96335
EES01631
EES05532
EES09201
EES16322
KXG19644
KXG37587
KXG37588
KXG38092
OQU78227
OQU91730

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G56270.1	EER96335	AT2G04630.1	21798944
AT3G56270.1	KXG38092	AT2G04630.1	21798944
AT3G56270.1	EES01631	AT2G41090.1	17360592
AT3G56270.1	EES09201	AT2G41090.1	17360592
AT3G56270.1	EES16322	AT2G41090.1	17360592
AT3G56270.1	OQU78227	AT2G41090.1	17360592
AT3G56270.1	EES01631	AT2G41100.1	17360592
AT3G56270.1	EES09201	AT2G41100.1	17360592
AT3G56270.1	EES16322	AT2G41100.1	17360592
AT3G56270.1	OQU78227	AT2G41100.1	17360592
AT3G56270.1	EES05532	AT3G01180.1	21798944
AT3G56270.1	KXG19644	AT3G01180.1	21798944
AT3G56270.1	OQU91730	AT3G01180.1	21798944
AT3G56270.1	KXG37587	AT4G14640.1	17360592
AT3G56270.1	KXG37588	AT4G14640.1	17360592
AT3G56270.1	EES01631	AT5G21274.1	17360592
AT3G56270.1	EES09201	AT5G21274.1	17360592
AT3G56270.1	EES16322	AT5G21274.1	17360592
AT3G56270.1	OQU78227	AT5G21274.1	17360592

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d007164_P001	Maize	nucleus	76.64	79.96
Os07t0677900-01	Rice	nucleus	55.88	62.24
TraesCS2A01G106600.1	Wheat	nucleus	62.11	59.44
EER92305	Sorghum	nucleus	54.84	58.17
TraesCS2D01G107200.1	Wheat	nucleus	60.9	56.59
TraesCS2B01G124200.1	Wheat	nucleus	61.25	56.46
HORVU2Hr1G018380.4	Barley	nucleus	61.94	55.85
GSMUA_Achr8P21300_001	Banana	nucleus	32.7	44.16
GSMUA_Achr3P09860_001	Banana	nucleus	30.8	42.69
KRH65464	Soybean	nucleus	40.31	41.61
KRH76097	Soybean	nucleus	39.97	41.32
KRG94824	Soybean	cytosol	31.83	38.49
PGSC0003DMT400068339	Potato	nucleus	37.54	38.07
Solyc09g042710.2.1	Tomato	nucleus	37.54	37.87
KRH00407	Soybean	nucleus	37.2	37.59
AT3G51720.1	Thale cress	nucleus	25.78	36.61
KRH40785	Soybean	nucleus	30.28	35.71
CDY18389	Canola	nucleus	30.28	34.65
CDY70507	Canola	cytosol, nucleus, plastid	25.95	34.64
CDX78029	Canola	nucleus	24.57	34.63
Bra036780.1-P	Field mustard	nucleus	24.57	34.63
CDX73702	Canola	nucleus	24.57	34.38
CDY07733	Canola	cytosol	19.9	34.33
AT2G38370.2	Thale cress	nucleus	32.01	34.32
CDY65893	Canola	nucleus	29.07	33.87
VIT_13s0067g02400.t01	Wine grape	nucleus	31.14	33.71
Bra017122.1-P	Field mustard	nucleus	29.41	33.53
CDX93176	Canola	cytosol	22.32	33.42
Bra000057.1-P	Field mustard	nucleus	28.03	33.2
PGSC0003DMT400074781	Potato	nucleus	27.51	31.93
CDY07266	Canola	cytosol, mitochondrion	8.82	31.48
KRH31225	Soybean	cytosol	30.28	31.25
Solyc06g050350.2.1	Tomato	nucleus	28.03	31.21
CDY24901	Canola	cytosol	25.43	31.01
CDY04348	Canola	nucleus	14.71	30.8
Bra016990.1-P	Field mustard	cytosol	23.88	30.53
CDY06986	Canola	cytosol	23.88	30.53
CDY19552	Canola	mitochondrion	10.55	30.5
Bra000190.1-P	Field mustard	nucleus	24.91	30.38
CDY07602	Canola	nucleus	24.91	30.38
KRG97647	Soybean	plastid	28.55	29.46
AT2G40480.1	Thale cress	cytosol	25.78	28.76
VIT_08s0058g01020.t01	Wine grape	cytosol	41.18	28.3
AT3G56270.1	Thale cress	cytosol	21.8	28.25
KRH73215	Soybean	cytosol	27.16	28.24
CDX72151	Canola	cytosol	20.42	27.96
CDY11490	Canola	nucleus	12.8	27.92
CDY58310	Canola	nucleus	12.8	27.92
KRH14870	Soybean	nucleus	27.68	27.26
CDY70964	Canola	cytosol	7.61	25.29
Bra007760.1-P	Field mustard	nucleus	13.49	24.3
Bra007233.1-P	Field mustard	cytosol	20.07	24.27
CDY27228	Canola	cytosol	20.07	24.27
Bra039972.1-P	Field mustard	cytosol	7.96	18.4
CDY12396	Canola	cytosol, endoplasmic reticulum, nucleus	9.86	16.91
OQU78181	Sorghum	nucleus	25.26	10.6

Protein Annotations

MapMan:35.1	EntrezGene:8074445	UniProt:C5X5L1	ncoils:Coil	EnsemblPlants:EER97734	ProteinID:EER97734
ProteinID:EER97734.1	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829
GO:GO:0008150	GO:GO:0009903	GO:GO:0009904	GO:GO:0009987	GO:GO:0016043	PFAM:PF05701
PANTHER:PTHR32054	PANTHER:PTHR32054:SF4	EnsemblPlantsGene:SORBI_3002G417000	UniParc:UPI0001A835DC	InterPro:Web	RefSeq:XP_002461213.1
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr2:+:76426496..76428868

Molecular Weight (calculated)

62894.2 Da

IEP (calculated)

6.296

GRAVY (calculated)

-0.580

Length

578 amino acids

Sequence
(BLAST)

001: MNGEAEPQGL APPGASAAAG GLQGRAEVDT SAPFKSVREA VNHFGGSAAW SSNLIKRMFA PPNPKKQEGA EELADLEEQI AQLEKALSVK ERETLDVLKE
101: LESTKKVVAD LKLKIQNEVA GAFCIPEEWV QSQAEAPAGT EDHAEVQPQN AETDVVVGTL HVPIGTGEPA EVHPENAETD AVMGALSVQL QQSPGSSVLR
201: GLEQAKANLN RTTSDLAAIR ASVESLRNDI AKERVLAERS REKVCANTTL IASLEDELDR TAQKLQTLRG LQRRRDDPSD IFFEIKKMTS ELEQLRNAAS
301: ASKSEAAMLS AEIEQMRASI GTAEVRCRAA KKIEEAARAA EALALAEIKI LLSNEASAED LQGTEGMSFS LEEYSELAAK AQEADECSRK KIEAAMVQVD
401: EANQTESDSL RNLEEAQLQV EECKKALQEA QKRVDAANRG KIAVEEALRR CRSTTGFRRR SVHDHPKFKH PAPRPRDSQN MDIVDASKAP LKPTLSIGQI
501: LSRKLMGPDG YDKSVRDDAS EASNMSLGQI LNRRRAVVYS SDATAHKKFS GKRKKFAFTG LSVFLAKQAK SKKKKGSH

Best Arabidopsis Sequence Match ( AT2G38370.1 )
(BLAST)

001: MAEFPEPGTV NPDSDLSNGR AEKPEIDTSA PFESVREAAT RFGGFGFWRP SLNKLPDASQ ENIQEPDIMG LKAQAFELQR ELIVKERETL EVLKELEATK
101: ATVLKLQQRN EAYEEDTLRE EVDSHIKPAG VVLKDLSQAK MNLCKIASIR ESVEQLKNKL NEERAALEKT RERLMEKSLK VFSLEEEEVR VRFAKEGQTG
201: EKDLGMLNEV QRLSRQAQEV KKTGENAELE VVKAMAETES TRDKIRTAKI RLVAARKMKE AAREAEAVAI AEIEAVTGSM NVGKAEAVTI SAEEYSVLAR
301: SARDAEEEAR KRVEDAMSRV EEANVSKKDV LKKVDEAAQE IETSKRVLEE AVERVDAANA SKIEAEEALR KWRSENGQRR RLSSSVNNTS KFKSRRETTT
401: RLMDVNGLHL TYDVVDGSSS SSTVPVLKPT MSIGQILSKK LLLAEDSDMN VANERRKMSL GQMLAKNSSS DKTVSKRSEG KENEKRTKTR KRKSFGFAKI
501: SVLLNKESKN KKKKKKIALN LR

Arabidopsis Description

Plant protein of unknown function (DUF827) [Source:TAIR;Acc:AT2G38370]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.