Factsheet for Bra007233.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra000214.1-P
Bra002368.1-P
Bra006595.1-P
Bra018296.1-P
Bra021487.1-P
Bra025617.1-P
Bra033467.1-P
Bra039138.1-P
Bra039723.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G56270.1	Bra025617.1-P	AT2G04630.1	21798944
AT3G56270.1	Bra000214.1-P	AT2G41090.1	17360592
AT3G56270.1	Bra000214.1-P	AT2G41100.1	17360592
AT3G56270.1	Bra021487.1-P	AT3G01180.1	21798944
AT3G56270.1	Bra039138.1-P	AT3G01180.1	21798944
AT3G56270.1	Bra018296.1-P	AT3G51920.1	17360592
AT3G56270.1	Bra033467.1-P	AT3G51920.1	17360592
AT3G56270.1	Bra039723.1-P	AT4G14640.1	17360592
AT3G56270.1	Bra002368.1-P	AT5G21274.1	17360592
AT3G56270.1	Bra006595.1-P	AT5G21274.1	17360592

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY27228	Canola	cytosol	92.47	92.47
AT3G56270.1	Thale cress	cytosol	50.21	53.81
Bra016990.1-P	Field mustard	cytosol	38.08	40.27
Bra000190.1-P	Field mustard	nucleus	39.54	39.87
KRH31225	Soybean	cytosol	30.96	26.43
KRG97647	Soybean	plastid	29.92	25.54
VIT_13s0067g02400.t01	Wine grape	nucleus	28.24	25.28
KRH73215	Soybean	cytosol	28.87	24.82
Bra036780.1-P	Field mustard	nucleus	20.92	24.39
KRH14870	Soybean	nucleus	28.24	23.0
GSMUA_Achr8P21300_001	Banana	nucleus	19.67	21.96
Os07t0677900-01	Rice	nucleus	23.01	21.19
Bra017122.1-P	Field mustard	nucleus	21.97	20.71
Zm00001d007164_P001	Maize	nucleus	23.85	20.58
Bra000057.1-P	Field mustard	nucleus	20.92	20.49
GSMUA_Achr3P09860_001	Banana	nucleus	17.78	20.38
EER92305	Sorghum	nucleus	23.22	20.37
Os03t0339700-01	Rice	nucleus	23.01	20.22
EER97734	Sorghum	nucleus	24.27	20.07
Zm00001d047516_P001	Maize	nucleus	22.8	20.0
PGSC0003DMT400074781	Potato	nucleus	20.29	19.48
Solyc06g050350.2.1	Tomato	nucleus	20.92	19.27
TraesCS2A01G106600.1	Wheat	nucleus	23.64	18.71
Bra007760.1-P	Field mustard	nucleus	12.13	18.07
HORVU2Hr1G018380.4	Barley	nucleus	23.85	17.78
TraesCS2B01G124200.1	Wheat	nucleus	23.22	17.7
TraesCS2D01G107200.1	Wheat	nucleus	22.8	17.52
GSMUA_Achr8P02810_001	Banana	mitochondrion	18.83	16.98
TraesCS1A01G299400.1	Wheat	cytosol	18.41	16.0
Os05t0476100-01	Rice	cytosol, nucleus, plastid	18.83	15.9
TraesCS1D01G298300.1	Wheat	nucleus	18.2	15.54
TraesCS1B01G309200.1	Wheat	cytosol	17.78	15.51
Zm00001d010610_P001	Maize	cytosol	16.95	14.54
HORVU1Hr1G070120.3	Barley	nucleus	17.78	13.75
Bra039972.1-P	Field mustard	cytosol	6.9	13.2
OQU78181	Sorghum	nucleus	16.11	5.59

Protein Annotations

EnsemblPlants:Bra007233.1	EnsemblPlants:Bra007233.1-P	EnsemblPlantsGene:Bra007233	ncoils:Coil	PANTHER:PTHR32054	PANTHER:PTHR32054:SF13
SEG:seg	UniParc:UPI0002542B7E	UniProt:M4CSP1	MapMan:35.1	:	:

Description

AT3G56270 (E=3e-128) | unknown protein

Coordinates

chrA09:+:28129714..28132853

Molecular Weight (calculated)

55011.1 Da

IEP (calculated)

6.377

GRAVY (calculated)

-0.700

Length

478 amino acids

Sequence
(BLAST)

001: MAERRLQKNP AAEAIPGTPI IRDVRIVSGS EVTGLCSRGS SRVPFKLKDN YDGVGEYDLN KMEEKAAKLE KDLIMKELET LDFLEALGST KKIVKDLKLE
101: LQQQQPMRCM ESPEHLRSEI KEMNHDERCH RTPMRSPDMI FMELKQANMN LGKTMDDLSM IRSYVESLNM NTVEHKDFLG VASLAEELNS LRLKHDDEER
201: FITKNVSVNP QCEQVKMVVE TNDNKQSSTC LKTARMRLVA ARKMEEAARA AEALAIAEMT MLSSAKDQDE FCFPEPPRSP LTLKEQMQED ISIEIMRKLE
301: EANEEVKQSQ QALETALNRV EIANVKQLEA EDAVRQWNIE SWKDQKAIKA KRSMKDDNIP RRSFLSHVSQ HEPLDNLAKP MLKRNVSVGS GLNRKQVPNT
401: DEKHLRRKFR FMHNTVPEQT ELYCHTVDKK GNCNYSFYEF GVDVDISKSN LRLKPYGEGE DLLGMSRIFE IKVEYSYI

Best Arabidopsis Sequence Match ( AT3G56270.1 )
(BLAST)

001: MAERQQSPAA ETIPGTPVIR EVRTGTGSEN FNPENTRRGC LRAEIDISPQ LYGGRGFWVP FNLEDNYDCV GEFDIKRMEE QTVELEKDLI MKELETLDLL
101: EALGSTKRIF EDLKWQLQQQ ALRCKETPQH LRSHSKEMVD EHCHRNPLKS PDLMTMEMKQ AGMNLCKTMD DLALIHSYAE SLNMKTKEEK DVLGVASLAE
201: ELNSLKFKPA GPDQVERFNT ENLPVNPQCE QIKMVVETYD TAFHKQSKTC PRTADMRLVA ARKMEEAARA AEALALAEMT ILSSRRNQDA LCFPKTPCFP
301: LTLKAQMNKE LSTNVSRIEI LRKLEEANEE VKQSKQALEV ALNRVEIASV KQLEAEEAFR QWNIESWKDQ KAVGAKRSMK RESFPQRSFL SHINQHEPLI
401: DLPEPMLKRN VSMGNALNRK DEKQLVTPRR KFRFIQTHQA SIRKTE

Arabidopsis Description

WEB family protein At3g56270 [Source:UniProtKB/Swiss-Prot;Acc:Q9LYL6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.