Factsheet for GSMUA_Achr8P02810_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 3
mitochondrion 3
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr11P...
GSMUA_Achr1P04700_001
GSMUA_Achr1P14070_001
GSMUA_Achr1P24640_001
GSMUA_Achr1P27230_001
GSMUA_Achr2P01120_001
GSMUA_Achr2P12680_001
GSMUA_Achr3P09330_001
GSMUA_Achr3P18200_001
GSMUA_Achr3P25040_001
GSMUA_Achr3P25390_001
GSMUA_Achr4P22570_001
GSMUA_Achr4P27190_001
GSMUA_Achr5P07820_001
GSMUA_Achr5P09010_001
GSMUA_Achr5P27590_001
GSMUA_Achr6P15990_001
GSMUA_Achr6P23670_001
GSMUA_Achr6P24410_001
GSMUA_Achr7P01390_001
GSMUA_Achr8P05790_001
GSMUA_Achr9P17280_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G56270.1	GSMUA_Achr3P18200_001	AT2G04630.1	21798944
AT3G56270.1	GSMUA_Achr4P27190_001	AT2G04630.1	21798944
AT3G56270.1	GSMUA_Achr10P...	AT2G41090.1	17360592
AT3G56270.1	GSMUA_Achr10P...	AT2G41090.1	17360592
AT3G56270.1	GSMUA_Achr10P...	AT2G41090.1	17360592
AT3G56270.1	GSMUA_Achr10P...	AT2G41090.1	17360592
AT3G56270.1	GSMUA_Achr11P...	AT2G41090.1	17360592
AT3G56270.1	GSMUA_Achr2P01120_001	AT2G41090.1	17360592
AT3G56270.1	GSMUA_Achr3P09330_001	AT2G41090.1	17360592
AT3G56270.1	GSMUA_Achr3P25040_001	AT2G41090.1	17360592
AT3G56270.1	GSMUA_Achr5P07820_001	AT2G41090.1	17360592
AT3G56270.1	GSMUA_Achr5P27590_001	AT2G41090.1	17360592
AT3G56270.1	GSMUA_Achr6P15990_001	AT2G41090.1	17360592
AT3G56270.1	GSMUA_Achr6P23670_001	AT2G41090.1	17360592
AT3G56270.1	GSMUA_Achr8P05790_001	AT2G41090.1	17360592
AT3G56270.1	GSMUA_Achr9P17280_001	AT2G41090.1	17360592
AT3G56270.1	GSMUA_Achr10P...	AT2G41100.1	17360592
AT3G56270.1	GSMUA_Achr10P...	AT2G41100.1	17360592
AT3G56270.1	GSMUA_Achr10P...	AT2G41100.1	17360592
AT3G56270.1	GSMUA_Achr10P...	AT2G41100.1	17360592
AT3G56270.1	GSMUA_Achr11P...	AT2G41100.1	17360592
AT3G56270.1	GSMUA_Achr2P01120_001	AT2G41100.1	17360592
AT3G56270.1	GSMUA_Achr3P09330_001	AT2G41100.1	17360592
AT3G56270.1	GSMUA_Achr3P25040_001	AT2G41100.1	17360592
AT3G56270.1	GSMUA_Achr5P07820_001	AT2G41100.1	17360592
AT3G56270.1	GSMUA_Achr5P27590_001	AT2G41100.1	17360592
AT3G56270.1	GSMUA_Achr6P15990_001	AT2G41100.1	17360592
AT3G56270.1	GSMUA_Achr6P23670_001	AT2G41100.1	17360592
AT3G56270.1	GSMUA_Achr8P05790_001	AT2G41100.1	17360592
AT3G56270.1	GSMUA_Achr9P17280_001	AT2G41100.1	17360592
AT3G56270.1	GSMUA_Achr1P24640_001	AT3G01180.1	21798944
AT3G56270.1	GSMUA_Achr1P04700_001	AT4G14640.1	17360592
AT3G56270.1	GSMUA_Achr1P14070_001	AT4G14640.1	17360592
AT3G56270.1	GSMUA_Achr1P27230_001	AT4G14640.1	17360592
AT3G56270.1	GSMUA_Achr2P12680_001	AT4G14640.1	17360592
AT3G56270.1	GSMUA_Achr3P25390_001	AT4G14640.1	17360592
AT3G56270.1	GSMUA_Achr4P22570_001	AT4G14640.1	17360592
AT3G56270.1	GSMUA_Achr5P09010_001	AT4G14640.1	17360592
AT3G56270.1	GSMUA_Achr6P24410_001	AT4G14640.1	17360592
AT3G56270.1	GSMUA_Achr7P01390_001	AT4G14640.1	17360592
AT3G56270.1	GSMUA_Achr10P...	AT5G21274.1	17360592
AT3G56270.1	GSMUA_Achr10P...	AT5G21274.1	17360592
AT3G56270.1	GSMUA_Achr10P...	AT5G21274.1	17360592
AT3G56270.1	GSMUA_Achr10P...	AT5G21274.1	17360592
AT3G56270.1	GSMUA_Achr11P...	AT5G21274.1	17360592
AT3G56270.1	GSMUA_Achr2P01120_001	AT5G21274.1	17360592
AT3G56270.1	GSMUA_Achr3P09330_001	AT5G21274.1	17360592
AT3G56270.1	GSMUA_Achr3P25040_001	AT5G21274.1	17360592
AT3G56270.1	GSMUA_Achr5P07820_001	AT5G21274.1	17360592
AT3G56270.1	GSMUA_Achr5P27590_001	AT5G21274.1	17360592
AT3G56270.1	GSMUA_Achr6P15990_001	AT5G21274.1	17360592
AT3G56270.1	GSMUA_Achr6P23670_001	AT5G21274.1	17360592
AT3G56270.1	GSMUA_Achr8P05790_001	AT5G21274.1	17360592
AT3G56270.1	GSMUA_Achr9P17280_001	AT5G21274.1	17360592

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr8P21300_001	Banana	nucleus	36.79	45.56
GSMUA_Achr3P09860_001	Banana	nucleus	33.58	42.69
Os05t0476100-01	Rice	cytosol, nucleus, plastid	39.43	36.93
TraesCS1B01G309200.1	Wheat	cytosol	36.79	35.58
TraesCS1A01G299400.1	Wheat	cytosol	36.6	35.27
KRH76097	Soybean	nucleus	36.79	34.88
KRH65464	Soybean	nucleus	36.6	34.64
TraesCS1D01G298300.1	Wheat	nucleus	36.6	34.64
KRG94824	Soybean	cytosol	31.13	34.52
AT3G51720.1	Thale cress	nucleus	26.42	34.4
CDY19552	Canola	mitochondrion	12.83	34.0
KRH00407	Soybean	nucleus	36.6	33.92
Zm00001d010610_P001	Maize	cytosol	35.47	33.75
PGSC0003DMT400068339	Potato	nucleus	36.04	33.51
CDX78029	Canola	nucleus	25.66	33.17
Solyc09g042710.2.1	Tomato	nucleus	35.66	32.98
Bra036780.1-P	Field mustard	nucleus	25.28	32.68
KRH40785	Soybean	nucleus	29.81	32.24
HORVU1Hr1G070120.3	Barley	nucleus	37.17	31.88
CDX73702	Canola	nucleus	24.72	31.72
CDY70507	Canola	cytosol, nucleus, plastid	24.72	30.25
KRH31225	Soybean	cytosol	31.89	30.18
CDY04348	Canola	nucleus	15.66	30.07
VIT_13s0067g02400.t01	Wine grape	nucleus	30.0	29.78
CDY65893	Canola	nucleus	27.74	29.64
PGSC0003DMT400074781	Potato	nucleus	27.36	29.12
AT2G38370.2	Thale cress	nucleus	29.43	28.94
Bra000057.1-P	Field mustard	nucleus	26.6	28.89
Bra017122.1-P	Field mustard	nucleus	27.55	28.8
CDY18389	Canola	nucleus	27.36	28.71
Solyc06g050350.2.1	Tomato	nucleus	28.11	28.71
CDY07733	Canola	cytosol	18.11	28.66
CDX93176	Canola	cytosol	20.57	28.24
KRG97647	Soybean	plastid	29.81	28.21
KRH73215	Soybean	cytosol	29.43	28.06
CDY07602	Canola	nucleus	24.34	27.22
CDY24901	Canola	cytosol	24.34	27.22
Bra000190.1-P	Field mustard	nucleus	24.34	27.22
CDY07266	Canola	cytosol, mitochondrion	8.3	27.16
KRH14870	Soybean	nucleus	29.43	26.58
VIT_08s0058g01020.t01	Wine grape	cytosol	41.13	25.92
CDY06986	Canola	cytosol	21.89	25.66
Bra016990.1-P	Field mustard	cytosol	21.89	25.66
CDY58310	Canola	nucleus	12.45	24.91
CDY11490	Canola	nucleus	12.45	24.91
AT2G40480.1	Thale cress	cytosol	23.77	24.32
AT3G56270.1	Thale cress	cytosol	18.68	22.2
CDX72151	Canola	cytosol	16.79	21.09
Bra007760.1-P	Field mustard	nucleus	12.45	20.56
CDY70964	Canola	cytosol	6.6	20.11
Bra007233.1-P	Field mustard	cytosol	16.98	18.83
CDY27228	Canola	cytosol	16.79	18.62
Bra039972.1-P	Field mustard	cytosol	7.55	16.0
CDY12396	Canola	cytosol, endoplasmic reticulum, nucleus	10.0	15.73
OQU78181	Sorghum	nucleus	30.0	11.54

Protein Annotations

EnsemblPlants:GSMUA_Achr8P02810_001	EnsemblPlants:GSMUA_Achr8T02810_001	EnsemblPlantsGene:GSMUA_Achr8G02810_001	InterPro:Web	ncoils:Coil	PANTHER:PTHR32054
PANTHER:PTHR32054:SF4	PFAM:PF05701	SEG:seg	UniParc:UPI0002965B29	UniProt:M0TM33	MapMan:35.1

Description

Putative expressed protein [Source:GMGC_GENE;Acc:GSMUA_Achr8G02810_001]

Coordinates

chr8:+:1941010..1944971

Molecular Weight (calculated)

59425.6 Da

IEP (calculated)

10.299

GRAVY (calculated)

-0.597

Length

530 amino acids

Sequence
(BLAST)

001: MRLRPLPTAA PAAAGSMEEA AKRSGRGEVD FSAPFRSVKE AVDRFGGSAT PWRPQPCPQF LLSPEDVELM KMEEQTIKLE MDLFLKERET LNVLKELEMT
101: KKIADGLKLQ LQGEASQVID DPEKYSCTML MPPSFNTHEK CSTYSKSHKV PVDQISDQKQ TPVSILRELK QAKLYLNKTT SGLAGTQSSV ELLKSAIEDE
201: KIFLKKTREK LNLNIVKVSS LEQDLSITLS QIAQIKDAKS KDSQSPSDML RRMEQLKSET EKFRRTAEAA KSEISKLSVG IQWTKSSIKT AEVRFVAAKK
301: VEAAARSAEV VALAEIKAQT DGNDTDEAHQ NTNKIVLAME EYAVLIKRAQ EADENLRRKM EAVMTDLEEA QQSKIAAEEA LRKWRSQHDR MRRLSHLTNT
401: KFKNSSAPHQ RRSWILDVNG LSMITAGSSS NSHGSTLSIG QILSRKLTGS EEQDSRALQI IKGKPKVSLR QMLSKRDDFL SPLMINDGDV QKQFSAKRKK
501: LRVLVLSLFL AKRKKKQRTS SPVSCHGKNV

Best Arabidopsis Sequence Match ( AT2G38370.2 )
(BLAST)

001: MVVKTGFPIT DSSSSASMAE FPEPGTVNPD SDLSNGRAEK PEIDTSAPFE SVREAATRFG GFGFWRPSLN KLPDASQENI QEPDIMGLKA QAFELQRELI
101: VKERETLEVL KELEATKATV LKLQQRNEAY EEDTLREEVD SHIKPAGVVL KDLSQAKMNL CKIASIRESV EQLKNKLNEE RAALEKTRER LMEKSLKVFS
201: LEEEEVRVRF AKEGQTGEKD LGMLNEVQRL SRQAQEVKKT GENAELEVVK AMAETESTRD KIRTAKIRLV AARKMKEAAR EAEAVAIAEI EAVTGSMNVG
301: KAEAVTISAE EYSVLARSAR DAEEEARKRV EDAMSRVEEA NVSKKDVLKK VDEAAQEIET SKRVLEEAVE RVDAANASKI EAEEALRKWR SENGQRRRLS
401: SSVNNTSKFK SRRETTTRLM DVNGLHLTYD VVDGSSSSST VPVLKPTMSI GQILSKKLLL AEDSDMNVAN ERRKMSLGQM LAKNSSSDKT VSKRSEGKEN
501: EKRTKTRKRK SFGFAKISVL LNKESKNKKK KKKIALNLR

Arabidopsis Description

Plant protein of unknown function (DUF827) [Source:TAIR;Acc:AT2G38370]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.