Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 4
- plastid 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH15937 | Soybean | plastid | 21.21 | 32.31 |
| Bra021486.1-P | Field mustard | endoplasmic reticulum | 18.69 | 17.54 |
| CDY55806 | Canola | plastid | 48.48 | 17.36 |
| GSMUA_Achr1P16610_001 | Banana | plastid | 25.25 | 16.39 |
| KRH01182 | Soybean | cytosol | 19.7 | 14.66 |
| CDY37538 | Canola | plastid | 50.0 | 14.62 |
| GSMUA_Achr1P24650_001 | Banana | mitochondrion | 57.07 | 14.34 |
| CDY43274 | Canola | plastid | 50.0 | 14.18 |
| GSMUA_Achr6P23190_001 | Banana | cytosol | 52.02 | 14.15 |
| Bra021487.1-P | Field mustard | cytosol | 24.75 | 13.21 |
| KRG93537 | Soybean | plastid | 50.51 | 12.92 |
| GSMUA_Achr4P10220_001 | Banana | plastid | 50.51 | 12.85 |
| Bra039138.1-P | Field mustard | plastid | 50.0 | 12.84 |
| VIT_14s0108g00940.t01 | Wine grape | plastid | 51.01 | 12.62 |
| CDY34693 | Canola | endoplasmic reticulum, golgi | 25.25 | 12.56 |
| KRH18473 | Soybean | plastid | 48.99 | 12.5 |
| AT3G01180.1 | Thale cress | plastid | 48.48 | 12.12 |
| GSMUA_Achr1P06140_001 | Banana | plastid | 31.31 | 10.06 |
| GSMUA_Achr9P20780_001 | Banana | plastid | 30.81 | 9.93 |
| GSMUA_Achr1P08190_001 | Banana | cytosol, plastid | 30.3 | 9.74 |
| GSMUA_Achr3P03290_001 | Banana | plastid | 28.28 | 8.1 |
| GSMUA_Achr3P16340_001 | Banana | plastid | 21.21 | 5.73 |
| CDY34695 | Canola | plastid | 3.54 | 4.9 |
| GSMUA_Achr8P27560_001 | Banana | plastid | 22.22 | 4.68 |
| GSMUA_Achr11P... | Banana | plastid | 20.71 | 4.03 |
| GSMUA_Achr5P00700_001 | Banana | plastid | 20.71 | 3.66 |
| GSMUA_Achr3P16350_001 | Banana | endoplasmic reticulum, vacuole | 1.01 | 0.9 |
| GSMUA_Achr8P24090_001 | Banana | cytosol | 0.0 | 0.0 |
| GSMUA_Achr1P16620_001 | Banana | cytosol | 0.0 | 0.0 |
| GSMUA_Achr11P... | Banana | cytosol, mitochondrion, plastid | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr1P24640_001 | EnsemblPlants:GSMUA_Achr1T24640_001 | EnsemblPlantsGene:GSMUA_Achr1G24640_001 | Gene3D:3.40.50.2000 | InterPro:Starch_synth_cat_dom | KEGG:00500+2.4.1.21 |
| PANTHER:PTHR12526 | PANTHER:PTHR12526:SF371 | PFAM:PF08323 | SUPFAM:SSF53756 | UniParc:UPI00029697E5 | UniProt:M0S2S1 |
| MapMan:35.1 | : | : | : | : | : |
Description
Putative Granule-bound starch synthase 2, chloroplastic/amyloplastic [Source:GMGC_GENE;Acc:GSMUA_Achr1G24640_001]
Coordinates
chr1:-:19093687..19095416
Molecular Weight (calculated)
21957.2 Da
IEP (calculated)
4.841
GRAVY (calculated)
-0.059
Length
198 amino acids
Sequence
(BLAST)
(BLAST)
001: MEDENLEVSA VTNIQALDEQ QEESPKERIL DSSNPNAMNV IVVAAECGLG DVVGELPKAL ARRGHRVMVF DPYGNYAEPK GVGVLEKVQG LGGYILSQAY
101: IDCVDFDFID SQTFTKMHRF YYHEPLASII NSAKMNYSFL LFQVPLHVPC GVRCGDGNLG FIANDWHTSL LPVYSKASYR DIGLMKYAPS LFVIHSSS
101: IDCVDFDFID SQTFTKMHRF YYHEPLASII NSAKMNYSFL LFQVPLHVPC GVRCGDGNLG FIANDWHTSL LPVYSKASYR DIGLMKYAPS LFVIHSSS
001: MASVAESSFP LLCQIKTQRR INSSTLRHSR VSYHDLPSGS LSFRSRSFVL GHRCKCVSRV EASGSDDDEP EDALQATIDK SKKVLAMQRN LLHQIAERRK
101: LVSSIKESTP DLDDAKASSK QESASSVNAN TDATKKEIMD GDANGSVSPS TYGKSSLSKE PEAKTFSPST ESLKNRKQSS ASVISSSPVT SPQKPSDVAT
201: NGKPWSSVVA SSVDPPYKPS SVMTSPEKTS DPVTSPGKPS KSRAGAFWSD PLPSYLTKAP QTSTMKTEKY VEKTPDVASS ETNEPGKDEE KPPPLAGANV
301: MNVILVAAEC APFSKTGGLG DVAGALPKSL ARRGHRVMVV VPRYAEYAEA KDLGVRKRYK VAGQDMEVMY FHAFIDGVDF VFIDSPEFRH LSNNIYGGNR
401: LDILKRMVLF CKAAVEVPWY VPCGGVCYGD GNLAFIANDW HTALLPVYLK AYYRDHGIMK YTRSVLVIHN IAHQGRGPVD DFSYVDLPSH YLDSFKLYDP
501: VGGEHFNIFA AGLKAADRVL TVSHGYSWEV KTLEGGWGLH NIINENDWKF RGIVNGIDTQ EWNPEFDTYL HSDDYTNYSL ENLHIGKPQC KAALQKELGL
601: PVRPDVPLIG FIGRLDHQKG VDLIAEAVPW MMSQDVQLVM LGTGRPDLEE VLRQMEHQYR DKARGWVGFS VKTAHRITAG ADILLMPSRF EPCGLNQLYA
701: MNYGTIPVVH AVGGLRDTVQ QFDPYSETGL GWTFDSAEAG KLIHALGNCL LTYREYKESW EGLQRRGMTQ DLSWDNAAEK YEEVLVAAKY HW
101: LVSSIKESTP DLDDAKASSK QESASSVNAN TDATKKEIMD GDANGSVSPS TYGKSSLSKE PEAKTFSPST ESLKNRKQSS ASVISSSPVT SPQKPSDVAT
201: NGKPWSSVVA SSVDPPYKPS SVMTSPEKTS DPVTSPGKPS KSRAGAFWSD PLPSYLTKAP QTSTMKTEKY VEKTPDVASS ETNEPGKDEE KPPPLAGANV
301: MNVILVAAEC APFSKTGGLG DVAGALPKSL ARRGHRVMVV VPRYAEYAEA KDLGVRKRYK VAGQDMEVMY FHAFIDGVDF VFIDSPEFRH LSNNIYGGNR
401: LDILKRMVLF CKAAVEVPWY VPCGGVCYGD GNLAFIANDW HTALLPVYLK AYYRDHGIMK YTRSVLVIHN IAHQGRGPVD DFSYVDLPSH YLDSFKLYDP
501: VGGEHFNIFA AGLKAADRVL TVSHGYSWEV KTLEGGWGLH NIINENDWKF RGIVNGIDTQ EWNPEFDTYL HSDDYTNYSL ENLHIGKPQC KAALQKELGL
601: PVRPDVPLIG FIGRLDHQKG VDLIAEAVPW MMSQDVQLVM LGTGRPDLEE VLRQMEHQYR DKARGWVGFS VKTAHRITAG ADILLMPSRF EPCGLNQLYA
701: MNYGTIPVVH AVGGLRDTVQ QFDPYSETGL GWTFDSAEAG KLIHALGNCL LTYREYKESW EGLQRRGMTQ DLSWDNAAEK YEEVLVAAKY HW
Arabidopsis Description
SS2Starch synthase, chloroplastic/amyloplastic (Fragment) [Source:UniProtKB/TrEMBL;Acc:W8QNS2]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.