Factsheet for Bra021486.1-P

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

extracellular 3
endoplasmic reticulum 4
vacuole 3
plasma membrane 3
golgi 3
plastid 3
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum
Any Predictor:	cytosol, mitochondrion, plastid, secretory
BaCelLo:	secretory
EpiLoc:	plastid
iPSORT:	mitochondrion
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	plastid
Predotar:	mitochondrion
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY34695	Canola	plastid	62.56	92.31
KRH15937	Soybean	plastid	24.64	40.0
Bra039138.1-P	Field mustard	plastid	82.94	22.7
TraesCS6D01G287000.1	Wheat	plastid	67.77	21.57
Os02t0744700-01	Rice	nucleus	68.25	21.27
HORVU6Hr1G075950.4	Barley	plastid	67.77	21.19
TraesCS6A01G307800.1	Wheat	plastid	67.77	21.15
TraesCS6B01G336400.1	Wheat	plastid	67.3	21.07
OQU91730	Sorghum	cytosol	67.3	20.76
PGSC0003DMT400003356	Potato	cytosol	73.93	20.34
Solyc02g088000.2.1	Tomato	nucleus, plastid	73.93	20.31
Zm00001d052263_P001	Maize	plastid	65.4	19.71
Zm00001d018033_P001	Maize	plastid	63.98	19.62
EES05532	Sorghum	plastid	65.4	19.6
VIT_14s0108g00940.t01	Wine grape	plastid	73.93	19.5
Zm00001d037234_P005	Maize	plastid	68.72	19.21
TraesCS1B01G155700.3	Wheat	plastid	66.82	18.98
TraesCS1A01G137200.1	Wheat	plastid	67.3	18.91
Os10t0437600-00	Rice	plastid	66.82	18.83
TraesCS1D01G138100.2	Wheat	plastid	66.82	18.77
GSMUA_Achr1P24640_001	Banana	cytosol	17.54	18.69
Zm00001d014150_P005	Maize	plastid	67.77	18.48
KXG19644	Sorghum	plastid	66.82	18.31
Os06t0229800-01	Rice	plastid	67.77	17.65
HORVU1Hr1G035960.19	Barley	cytosol, plastid	66.35	17.43
TraesCS7B01G093800.2	Wheat	plastid	65.4	17.29
TraesCS7A01G189000.1	Wheat	plastid	64.93	17.21
TraesCS7D01G190100.1	Wheat	plastid	64.45	17.02
HORVU7Hr1G038420.1	Barley	plastid	64.93	16.0
Bra021487.1-P	Field mustard	cytosol	24.17	13.75
Bra009747.1-P	Field mustard	plastid	40.76	13.21
Bra010189.1-P	Field mustard	nucleus	33.18	9.56
Bra021017.1-P	Field mustard	plastid	21.8	4.51
Bra019836.1-P	Field mustard	endoplasmic reticulum, vacuole	10.43	4.39
Bra024412.1-P	Field mustard	plastid	10.9	3.88
Bra016818.1-P	Field mustard	cytosol	20.85	3.35

Protein Annotations

EnsemblPlants:Bra021486.1	EnsemblPlants:Bra021486.1-P	EnsemblPlantsGene:Bra021486	Gene3D:3.40.50.2000	InterPro:Starch_synth_cat_dom	KEGG:00500+2.4.1.21
PANTHER:PTHR12526	PANTHER:PTHR12526:SF337	PFAM:PF08323	SUPFAM:SSF53756	UniParc:UPI000254473F	UniProt:M4DY90
MapMan:35.1	:	:	:	:	:

Description

AT3G01180 (E=1e-059) AtSS2 | AtSS2 (starch synthase 2); transferase, transferring glycosyl groups

Coordinates

chrA01:+:25032332..25033637

Molecular Weight (calculated)

24132.7 Da

IEP (calculated)

6.784

GRAVY (calculated)

-0.135

Length

211 amino acids

Sequence
(BLAST)

001: MVLFCKAAVE VKPLALQYHN FAFSLYQVWF LCPGSLVCSS GGVCYGDGNL AFIANDWHTA LLPVYLKAYY RDHGLMKYTR SVLVIHNIAH QGRGPVDDFS
101: YVDLPGHYLD SFKLYDPVGG EHFNIFAAGL KAADRVLTVR HGYSWETYLR DEVWNRSAGK LIHALGNCLL TYREYKESWE GLQRRGMTQD LSWDNAAENY
201: EEVLVAAKYQ W

Best Arabidopsis Sequence Match ( AT3G01180.1 )
(BLAST)

001: MASVAESSFP LLCQIKTQRR INSSTLRHSR VSYHDLPSGS LSFRSRSFVL GHRCKCVSRV EASGSDDDEP EDALQATIDK SKKVLAMQRN LLHQIAERRK
101: LVSSIKESTP DLDDAKASSK QESASSVNAN TDATKKEIMD GDANGSVSPS TYGKSSLSKE PEAKTFSPST ESLKNRKQSS ASVISSSPVT SPQKPSDVAT
201: NGKPWSSVVA SSVDPPYKPS SVMTSPEKTS DPVTSPGKPS KSRAGAFWSD PLPSYLTKAP QTSTMKTEKY VEKTPDVASS ETNEPGKDEE KPPPLAGANV
301: MNVILVAAEC APFSKTGGLG DVAGALPKSL ARRGHRVMVV VPRYAEYAEA KDLGVRKRYK VAGQDMEVMY FHAFIDGVDF VFIDSPEFRH LSNNIYGGNR
401: LDILKRMVLF CKAAVEVPWY VPCGGVCYGD GNLAFIANDW HTALLPVYLK AYYRDHGIMK YTRSVLVIHN IAHQGRGPVD DFSYVDLPSH YLDSFKLYDP
501: VGGEHFNIFA AGLKAADRVL TVSHGYSWEV KTLEGGWGLH NIINENDWKF RGIVNGIDTQ EWNPEFDTYL HSDDYTNYSL ENLHIGKPQC KAALQKELGL
601: PVRPDVPLIG FIGRLDHQKG VDLIAEAVPW MMSQDVQLVM LGTGRPDLEE VLRQMEHQYR DKARGWVGFS VKTAHRITAG ADILLMPSRF EPCGLNQLYA
701: MNYGTIPVVH AVGGLRDTVQ QFDPYSETGL GWTFDSAEAG KLIHALGNCL LTYREYKESW EGLQRRGMTQ DLSWDNAAEK YEEVLVAAKY HW

Arabidopsis Description

SS2Starch synthase, chloroplastic/amyloplastic (Fragment) [Source:UniProtKB/TrEMBL;Acc:W8QNS2]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.