Factsheet for Zm00001d014150_P005

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

plastid: 22065420
plastid: 23198870

msms PMID: 23198870 doi

M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d018045_P001
Zm00001d037221_P001
Zm00001d044836_P001
Zm00001d052256_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G01180.1	Zm00001d018045_P001	AT3G47620.1	21798944
AT3G01180.1	Zm00001d037221_P001	AT3G47620.1	21798944
AT3G01180.1	Zm00001d044836_P001	AT3G47620.1	21798944
AT3G01180.1	Zm00001d052256_P001	AT3G47620.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU91730	Sorghum	cytosol	76.61	86.7
KRH01182	Soybean	cytosol	26.49	77.07
TraesCS1B01G155700.3	Wheat	plastid	70.93	73.89
TraesCS1A01G137200.1	Wheat	plastid	70.93	73.1
TraesCS1D01G138100.2	Wheat	plastid	70.67	72.84
CDY34695	Canola	plastid	13.44	72.73
Os10t0437600-00	Rice	plastid	68.86	71.16
HORVU1Hr1G035960.19	Barley	cytosol, plastid	70.54	68.0
Bra021486.1-P	Field mustard	endoplasmic reticulum	18.48	67.77
CDY43274	Canola	plastid	54.26	60.17
CDY37538	Canola	plastid	52.45	59.97
GSMUA_Achr6P23190_001	Banana	cytosol	54.01	57.42
Zm00001d052263_P001	Maize	plastid	50.65	56.0
Zm00001d018033_P001	Maize	plastid	49.61	55.81
KRH18473	Soybean	plastid	55.3	55.15
KRG93537	Soybean	plastid	54.26	54.26
PGSC0003DMT400003356	Potato	cytosol	53.49	53.98
Solyc02g088000.2.1	Tomato	nucleus, plastid	53.1	53.52
Bra039138.1-P	Field mustard	plastid	52.84	53.05
VIT_14s0108g00940.t01	Wine grape	plastid	54.52	52.75
GSMUA_Achr1P24650_001	Banana	mitochondrion	52.97	52.03
AT3G01180.1	Thale cress	plastid	53.1	51.89
Zm00001d037234_P005	Maize	plastid	47.16	48.34
KRH15937	Soybean	plastid	8.01	47.69
CDY55806	Canola	plastid	33.72	47.2
Zm00001d045261_P006	Maize	plastid	31.4	43.39
Bra021487.1-P	Field mustard	cytosol	19.12	39.89
CDY34693	Canola	endoplasmic reticulum, golgi	18.48	35.93
Zm00001d033937_P002	Maize	plastid	26.61	33.83
Zm00001d045462_P001	Maize	plastid	26.61	33.83
Zm00001d033690_P001	Maize	cytosol, plastid	14.47	32.94
Zm00001d019479_P004	Maize	plastid	25.97	32.11
Zm00001d029360_P001	Maize	cytosol	10.21	31.6
Zm00001d027242_P002	Maize	plastid	18.86	24.91
Zm00001d010821_P002	Maize	plastid	21.83	18.59
Zm00001d026337_P013	Maize	plastid	22.35	14.53
Zm00001d002256_P012	Maize	plastid	21.96	14.31
Zm00001d051976_P002	Maize	plastid	8.27	12.21
Zm00001d000002_P002	Maize	plastid	21.19	9.78

Protein Annotations

KEGG:00500+2.4.1.21	MapMan:3.2.2.4.2	Gene3D:3.40.50.2000	UniProt:A0A1D6GQA5	ProteinID:AQK65354.1	GO:GO:0003674
GO:GO:0003824	GO:GO:0004373	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009501	GO:GO:0009507
GO:GO:0009536	GO:GO:0009987	GO:GO:0016740	GO:GO:0016757	GO:GO:0019252	InterPro:GS/SS
InterPro:Glyco_trans_1	HAMAP:MF_00484	PFAM:PF00534	PFAM:PF08323	PANTHER:PTHR12526	PANTHER:PTHR12526:SF542
SUPFAM:SSF53756	InterPro:Starch_synth_cat_dom	TIGRFAMs:TIGR02095	UniParc:UPI00022078F3	EnsemblPlantsGene:Zm00001d014150	EnsemblPlants:Zm00001d014150_P005
EnsemblPlants:Zm00001d014150_T005	SEG:seg	:	:	:	:

Description

Starch synthase IIc

Coordinates

chr5:-:34229328..34244969

Molecular Weight (calculated)

86948.7 Da

IEP (calculated)

5.813

GRAVY (calculated)

-0.390

Length

774 amino acids

Sequence
(BLAST)

001: MPAPMAASTF PVAPLHAPPL VRPRVVPPSP TFGCCCRCSA PRGGLTLRPQ ACAPRRRCNP AIRPVRFCAE VGSVWPVVLT RSIRRGFQKG ISVARVDDNA
101: AGQVSLGDDN EDLDHITNET LRTTIRKSKE VLARHKIIMN QISEKKQLIS TILDSSIHNE QEPLSGQSDG SLSNLNAIAK GTEIGYDHQT YHNRSLQQYE
201: FDTTYGESIY DQNTYYESSE DDGTDFSENY QYKSFPRATR SVYELEEDNG MKQGYVVQLS QASGHEQSVN EGTNDNASEV DVMNVILVAA ECAPWSKTGG
301: LGDVAGALPK ALAKRGHRVM VVVPKYGDYE EPQEIGEPRS YHVAGQDMEV KYYHAYIDGV DFVFIDNPVF HYVQSEIYGG DQTDIWKRMV LLCKAAVEVQ
401: WYVPCGGFCY GDGNLVFIAN DWHTALLPVY LKAYYRDNGF MPYARSVLVI HNIAHQGRGP IDDFRYLDLP GHYMDQFKLY DPFGGDHLNI FAAGIRAADR
501: LLTVSHGYAW ELKTPDGGWG LHSIINENDW KFQGIVNGID TADWNPRHDV HLQSDGYTNY SLETVQTGKA QCKEALQKEL GLPVRGDVPV IAFIGRLDHQ
601: KGVDLIAEAM PWIAGQDVQL IMLGTGRQDL EDTLRRLESQ HYDRVRGWVG FSVRLAHRMT AGADILLMPS RFEPCGLNQL YAMMYGTVPV VHAVGGLRDT
701: VQHYNPYEEV GVGWTFEKAE ANRMIDALGH CLNTYRNYWS SWEGIQRRGM MQDLSWDNAA KLYEEVLLAA KYQW

Best Arabidopsis Sequence Match ( AT3G01180.1 )
(BLAST)

001: MASVAESSFP LLCQIKTQRR INSSTLRHSR VSYHDLPSGS LSFRSRSFVL GHRCKCVSRV EASGSDDDEP EDALQATIDK SKKVLAMQRN LLHQIAERRK
101: LVSSIKESTP DLDDAKASSK QESASSVNAN TDATKKEIMD GDANGSVSPS TYGKSSLSKE PEAKTFSPST ESLKNRKQSS ASVISSSPVT SPQKPSDVAT
201: NGKPWSSVVA SSVDPPYKPS SVMTSPEKTS DPVTSPGKPS KSRAGAFWSD PLPSYLTKAP QTSTMKTEKY VEKTPDVASS ETNEPGKDEE KPPPLAGANV
301: MNVILVAAEC APFSKTGGLG DVAGALPKSL ARRGHRVMVV VPRYAEYAEA KDLGVRKRYK VAGQDMEVMY FHAFIDGVDF VFIDSPEFRH LSNNIYGGNR
401: LDILKRMVLF CKAAVEVPWY VPCGGVCYGD GNLAFIANDW HTALLPVYLK AYYRDHGIMK YTRSVLVIHN IAHQGRGPVD DFSYVDLPSH YLDSFKLYDP
501: VGGEHFNIFA AGLKAADRVL TVSHGYSWEV KTLEGGWGLH NIINENDWKF RGIVNGIDTQ EWNPEFDTYL HSDDYTNYSL ENLHIGKPQC KAALQKELGL
601: PVRPDVPLIG FIGRLDHQKG VDLIAEAVPW MMSQDVQLVM LGTGRPDLEE VLRQMEHQYR DKARGWVGFS VKTAHRITAG ADILLMPSRF EPCGLNQLYA
701: MNYGTIPVVH AVGGLRDTVQ QFDPYSETGL GWTFDSAEAG KLIHALGNCL LTYREYKESW EGLQRRGMTQ DLSWDNAAEK YEEVLVAAKY HW

Arabidopsis Description

SS2Starch synthase, chloroplastic/amyloplastic (Fragment) [Source:UniProtKB/TrEMBL;Acc:W8QNS2]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.