Factsheet for Zm00001d018033_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

plastid: 20089766
plastid: 22065420
plastid: 23198870

msms PMID: 20089766 doi

G Friso, W Majeran, M Huang, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

msms PMID: 23198870 doi

M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d018045_P001
Zm00001d037221_P001
Zm00001d044836_P001
Zm00001d052256_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G01180.1	Zm00001d018045_P001	AT3G47620.1	21798944
AT3G01180.1	Zm00001d037221_P001	AT3G47620.1	21798944
AT3G01180.1	Zm00001d044836_P001	AT3G47620.1	21798944
AT3G01180.1	Zm00001d052256_P001	AT3G47620.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES05532	Sorghum	plastid	91.28	89.2
Zm00001d052263_P001	Maize	plastid	89.24	87.71
KRH01182	Soybean	cytosol	30.09	77.82
Os02t0744700-01	Rice	nucleus	76.16	77.4
TraesCS6D01G287000.1	Wheat	plastid	73.69	76.47
HORVU6Hr1G075950.4	Barley	plastid	74.27	75.7
TraesCS6B01G336400.1	Wheat	plastid	72.97	74.48
TraesCS6A01G307800.1	Wheat	plastid	73.11	74.41
CDY34695	Canola	plastid	14.53	69.93
Bra021486.1-P	Field mustard	endoplasmic reticulum	19.62	63.98
CDY43274	Canola	plastid	57.85	57.02
CDY37538	Canola	plastid	55.81	56.72
Zm00001d037234_P005	Maize	plastid	61.63	56.16
KRG93537	Soybean	plastid	59.01	52.45
KRH18473	Soybean	plastid	59.01	52.32
Solyc02g088000.2.1	Tomato	nucleus, plastid	56.83	50.91
AT3G01180.1	Thale cress	plastid	58.43	50.76
PGSC0003DMT400003356	Potato	cytosol	56.54	50.72
VIT_14s0108g00940.t01	Wine grape	plastid	58.58	50.38
Bra039138.1-P	Field mustard	plastid	56.25	50.19
Zm00001d014150_P005	Maize	plastid	55.81	49.61
KRH15937	Soybean	plastid	9.3	49.23
CDY55806	Canola	plastid	36.63	45.57
Zm00001d045261_P006	Maize	plastid	36.63	45.0
Bra021487.1-P	Field mustard	cytosol	22.09	40.97
CDY34693	Canola	endoplasmic reticulum, golgi	20.64	35.68
Zm00001d033937_P002	Maize	plastid	29.94	33.83
Zm00001d045462_P001	Maize	plastid	29.94	33.83
Zm00001d033690_P001	Maize	cytosol, plastid	15.7	31.76
Zm00001d019479_P004	Maize	plastid	28.78	31.63
Zm00001d029360_P001	Maize	cytosol	10.76	29.6
Zm00001d027242_P002	Maize	plastid	19.19	22.53
Zm00001d010821_P002	Maize	plastid	25.29	19.14
Zm00001d026337_P013	Maize	plastid	24.42	14.11
Zm00001d002256_P012	Maize	plastid	24.13	13.97
Zm00001d051976_P002	Maize	plastid	10.32	13.55
Zm00001d000002_P002	Maize	plastid	24.85	10.2

Protein Annotations

KEGG:00500+2.4.1.21	MapMan:3.2.2.4.2	Gene3D:3.40.50.2000	UniProt:A0A1D6HKA3	ProteinID:AQK74861.1	GO:GO:0003674
GO:GO:0003824	GO:GO:0004373	GO:GO:0016740	InterPro:GS/SS	HAMAP:MF_00484	PFAM:PF08323
PFAM:PF13692	PANTHER:PTHR12526	PANTHER:PTHR12526:SF371	SUPFAM:SSF53756	SignalP:SignalP-noTM	InterPro:Starch_synth_cat_dom
TIGRFAMs:TIGR02095	UniParc:UPI0008426559	EnsemblPlantsGene:Zm00001d018033	EnsemblPlants:Zm00001d018033_P001	EnsemblPlants:Zm00001d018033_T001	SEG:seg

Description

Starch synthase IIb-2

Coordinates

chr5:-:212494773..212500400

Molecular Weight (calculated)

74859.3 Da

IEP (calculated)

6.129

GRAVY (calculated)

-0.232

Length

688 amino acids

Sequence
(BLAST)

001: MAGATSSSSV SLILILVASS SPRRSRGRVG IALRSYGYSG AELRLHWARR GSSRDGPAVV RAAAVPAGGE GEDAAATQAV YSTSPPKTAT SAPKQNQSAA
101: KQNGTVGSSS ASKSPAPAVS ESKAEPSAPV TKTETDASAK VEELKPSVDD AKPVESIGIP EPVDAKVDAA AATDAAASAA DDTEDKEHGP LAGPNVMNVV
201: VVASECAPFC KTGGLGDVVG ALPKALARRG HRVMVVIPRY GEYAEARDLG VRRRYRVAGQ DSEVTYFHSY IDGVDFVFIE APPFRHRHND IYGGERSDVL
301: KRIILFCKAA VEVPWYAPCG GTVYGDGNLV FIANDWHTAL LPVYLKAYYR DNGLMQYARS VLVIHNIAHQ GRGPVDDFVN FDLPEHYIDH FKLYDNIGGE
401: HCNVFAAGLK MADQVVTVSN GYLWELRTSE GGWGLHDIIN QNDWKLQGIV NGIDMSEWNP AVDVHLHSDE YTNYTFETLD TGKRQCKAAL QRQLGLQVRD
501: DVPLIGFIGR LDHQKGVDII ADAIHWIAGQ DVQLVMLGTG RPDLEDMLRR CEAEHSDKVR AWVGFSVPLA HRITAGADVL LMPSRFEPCG LNQLYAMAYG
601: TVPVVHAVGG LRDTVAPFDP FNDTGLGWTF DRAEANRMID ALSHCLNTFR NYKESWRGLE ARGMAQDLSW DHAAVLYEDV LVKAKYQW

Best Arabidopsis Sequence Match ( AT3G01180.1 )
(BLAST)

001: MASVAESSFP LLCQIKTQRR INSSTLRHSR VSYHDLPSGS LSFRSRSFVL GHRCKCVSRV EASGSDDDEP EDALQATIDK SKKVLAMQRN LLHQIAERRK
101: LVSSIKESTP DLDDAKASSK QESASSVNAN TDATKKEIMD GDANGSVSPS TYGKSSLSKE PEAKTFSPST ESLKNRKQSS ASVISSSPVT SPQKPSDVAT
201: NGKPWSSVVA SSVDPPYKPS SVMTSPEKTS DPVTSPGKPS KSRAGAFWSD PLPSYLTKAP QTSTMKTEKY VEKTPDVASS ETNEPGKDEE KPPPLAGANV
301: MNVILVAAEC APFSKTGGLG DVAGALPKSL ARRGHRVMVV VPRYAEYAEA KDLGVRKRYK VAGQDMEVMY FHAFIDGVDF VFIDSPEFRH LSNNIYGGNR
401: LDILKRMVLF CKAAVEVPWY VPCGGVCYGD GNLAFIANDW HTALLPVYLK AYYRDHGIMK YTRSVLVIHN IAHQGRGPVD DFSYVDLPSH YLDSFKLYDP
501: VGGEHFNIFA AGLKAADRVL TVSHGYSWEV KTLEGGWGLH NIINENDWKF RGIVNGIDTQ EWNPEFDTYL HSDDYTNYSL ENLHIGKPQC KAALQKELGL
601: PVRPDVPLIG FIGRLDHQKG VDLIAEAVPW MMSQDVQLVM LGTGRPDLEE VLRQMEHQYR DKARGWVGFS VKTAHRITAG ADILLMPSRF EPCGLNQLYA
701: MNYGTIPVVH AVGGLRDTVQ QFDPYSETGL GWTFDSAEAG KLIHALGNCL LTYREYKESW EGLQRRGMTQ DLSWDNAAEK YEEVLVAAKY HW

Arabidopsis Description

SS2Starch synthase, chloroplastic/amyloplastic (Fragment) [Source:UniProtKB/TrEMBL;Acc:W8QNS2]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.