Factsheet for Zm00001d033690_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, plastid
Any Predictor:	cytosol, mitochondrion, plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	cytosol
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d029360_P001	Maize	cytosol	48.24	65.6
Zm00001d019479_P004	Maize	plastid	72.94	39.62
EER98410	Sorghum	plastid	70.59	39.54
TraesCS2A01G373600.1	Wheat	plastid	68.53	38.9
TraesCS2D01G369800.1	Wheat	plastid	68.24	38.73
HORVU2Hr1G090980.3	Barley	plastid	67.35	38.62
TraesCS2B01G390700.1	Wheat	plastid	67.94	38.56
Os07t0412100-01	Rice	plastid	65.29	36.51
Zm00001d027242_P002	Maize	plastid	60.0	34.81
Solyc08g083320.2.1	Tomato	plastid	55.59	31.4
VIT_15s0048g02600.t01	Wine grape	plastid	56.47	31.27
PGSC0003DMT400031568	Potato	plastid	55.59	31.14
KRG92546	Soybean	plastid	55.29	31.07
VIT_02s0025g02790.t01	Wine grape	plastid	55.29	31.07
AT1G32900.1	Thale cress	plastid	55.29	30.82
KRH06370	Soybean	nucleus, plastid	55.88	30.69
KRH47803	Soybean	nucleus	55.59	30.53
KRH34245	Soybean	plastid	54.41	30.43
Zm00001d033937_P002	Maize	plastid	51.18	28.57
Zm00001d045462_P001	Maize	plastid	51.18	28.57
Bra010189.1-P	Field mustard	nucleus	55.88	25.96
Zm00001d045261_P006	Maize	plastid	30.88	18.75
CDY71840	Canola	plastid	15.29	17.22
CDX73274	Canola	plastid	18.24	16.23
Zm00001d018033_P001	Maize	plastid	31.76	15.7
Zm00001d052263_P001	Maize	plastid	32.06	15.57
Zm00001d014150_P005	Maize	plastid	32.94	14.47
Zm00001d037234_P005	Maize	plastid	31.18	14.04
Zm00001d051976_P002	Maize	plastid	15.59	10.11
Zm00001d010821_P002	Maize	plastid	26.47	9.9
Zm00001d026337_P013	Maize	plastid	25.59	7.3
Zm00001d002256_P012	Maize	plastid	25.29	7.24
Zm00001d000002_P002	Maize	plastid	25.88	5.25

Protein Annotations

EnsemblPlants:Zm00001d033690_P001	EnsemblPlants:Zm00001d033690_T001	EnsemblPlantsGene:Zm00001d033690	Gene3D:3.40.50.2000	InterPro:Glyco_trans_1	InterPro:Starch_synth_cat_dom
KEGG:00500+2.4.1.21	PANTHER:PTHR12526	PANTHER:PTHR12526:SF383	PFAM:PF00534	PFAM:PF08323	ProteinID:ONM08430.1
SEG:seg	SUPFAM:SSF53756	UniParc:UPI00084316B9	UniProt:A0A1D6L1M5	MapMan:35.1	:

Description

Granule-bound starch synthase 1 chloroplastic/amyloplastic

Coordinates

chr1:+:271334838..271339275

Molecular Weight (calculated)

37489.3 Da

IEP (calculated)

4.970

GRAVY (calculated)

0.038

Length

340 amino acids

Sequence
(BLAST)

001: MTWIRGGPSS LDSQNIAAAI DDSCHAFLAA VRSSCAFRRR FRALHPPPLL DFFFDPDGNE NPAFMPIRRG SDRGHAATVR DLDALLTPRP GEDVVFVAND
101: WHTAILPCYM NSMYKPNGIL LMGRKLNWMK AEIIESDLVL TVSPHYIKEL TSGPHKGVEL DGVLRAKPLE IGIVNGMDVY EWDPSTDKYI SVKYDATMVT
201: EARSLNKERL QAEVGLPVDS SIPVIVFVGC LEEQKGSDIL IVAIPEFVGE NVQIIVLVWH GKEEDGGIAK FNVPLAHMMF ARADFIIVPS RFEPCGLIQL
301: QGMRYGVIPI CSSIGGFVDT VEEGVTGFHM GSCNVETQPT

Best Arabidopsis Sequence Match ( AT1G32900.1 )
(BLAST)

001: MATVTASSNF VSRTSLFNNH GASSCSDVAQ ITLKGQSLTH CGLRSFNMVD NLQRRSQAKP VSAKSSKRSS KVKTAGKIVC EKGMSVIFIG AEVGPWSKTG
101: GLGDVLGGLP PALAARGHRV MTICPRYDQY KDAWDTCVVV QIKVGDKVEN VRFFHCYKRG VDRVFVDHPI FLAKVVGKTG SKIYGPITGV DYNDNQLRFS
201: LLCQAALEAP QVLNLNSSKY FSGPYGEDVV FVANDWHTAL LPCYLKSMYQ SRGVYMNAKV VFCIHNIAYQ GRFAFDDYSL LNLPISFKSS FDFMDGYEKP
301: VKGRKINWMK AAILEAHRVL TVSPYYAQEL ISGVDRGVEL HKYLRMKTVS GIINGMDVQE WNPSTDKYID IKYDITTVTD AKPLIKEALQ AAVGLPVDRD
401: VPVIGFIGRL EEQKGSDILV EAISKFMGLN VQMVILGTGK KKMEAQILEL EEKFPGKAVG VAKFNVPLAH MITAGADFII VPSRFEPCGL IQLHAMRYGT
501: VPIVASTGGL VDTVKDGYTG FHIGRFNVKC EVVDPDDVIA TAKAVTRAVA VYGTSAMQEM VKNCMDQDFS WKGPARLWEK VLLSLNVAGS EAGTEGEEIA
601: PLAKENVATP

Arabidopsis Description

GBSS1Granule-bound starch synthase 1, chloroplastic/amyloplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9MAQ0]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.