Factsheet for TraesCS2B01G390700.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2D01G369800.1	Wheat	plastid	98.16	98.16
TraesCS2A01G373600.1	Wheat	plastid	97.33	97.33
HORVU2Hr1G090980.3	Barley	plastid	95.99	96.96
EER98410	Sorghum	plastid	86.64	85.5
Os07t0412100-01	Rice	plastid	85.48	84.21
Zm00001d019479_P004	Maize	plastid	84.97	81.31
Zm00001d029360_P001	Maize	cytosol	30.72	73.6
Zm00001d033690_P001	Maize	cytosol, plastid	38.56	67.94
VIT_15s0048g02600.t01	Wine grape	plastid	67.95	66.29
Solyc08g083320.2.1	Tomato	plastid	65.94	65.61
PGSC0003DMT400031568	Potato	plastid	66.11	65.24
VIT_02s0025g02790.t01	Wine grape	plastid	65.61	64.96
KRH06370	Soybean	nucleus, plastid	66.94	64.78
KRH47803	Soybean	nucleus	66.78	64.62
KRG92546	Soybean	plastid	64.94	64.3
KRH34245	Soybean	plastid	63.94	62.99
AT1G32900.1	Thale cress	plastid	63.77	62.62
CDY71840	Canola	plastid	29.22	57.95
Bra010189.1-P	Field mustard	nucleus	63.94	52.32
Zm00001d027242_P002	Maize	plastid	50.75	51.88
CDX73274	Canola	plastid	31.72	49.74
TraesCS7B01G018600.1	Wheat	cytosol	31.89	36.66
TraesCS6B01G336400.1	Wheat	plastid	34.06	30.27
TraesCS1B01G155700.3	Wheat	plastid	35.06	28.26
TraesCS7B01G093800.2	Wheat	plastid	33.22	24.94
TraesCS1B01G368500.1	Wheat	plastid	26.21	17.2
TraesCS2B01G491700.2	Wheat	plastid	24.87	11.68
TraesCS1B01G119300.1	Wheat	plastid	24.87	9.25

Protein Annotations

KEGG:00500+2.4.1.21	MapMan:3.2.2.4.5	Gene3D:3.40.50.2000	GO:GO:0003674	GO:GO:0003824	GO:GO:0004373
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0009507	GO:GO:0009536
GO:GO:0009569	GO:GO:0016740	InterPro:GS/SS	InterPro:Glyco_trans_1	HAMAP:MF_00484	PFAM:PF00534
PFAM:PF08323	PANTHER:PTHR12526	PANTHER:PTHR12526:SF383	SUPFAM:SSF53756	InterPro:Starch_synth_cat_dom	TIGRFAMs:TIGR02095
EnsemblPlantsGene:TraesCS2B01G390700	EnsemblPlants:TraesCS2B01G390700.1	TIGR:cd03791	SEG:seg	:	:

Description

No Description!

Coordinates

chr2B:+:555321220..555324294

Molecular Weight (calculated)

66062.9 Da

IEP (calculated)

6.822

GRAVY (calculated)

-0.056

Length

599 amino acids

Sequence
(BLAST)

001: MGSIPNYCSY QTNSVGSLKL SPHIQFQQSC NNEVMFLSMR NKTQLAKRRA TNYGTHRNSS RTPAPIVCST GMPIIFVATE VHPWCKTGGL GDVVGGLPPA
101: LAAMGHRVMT IAPRYDQYKD TWDTNVLVEV IVGDRTETVR FFHCYKRGVD RVFVDHPMFL EKVWGKTGSK LYGPTTGTDF RDNQLRFCLL CLAALEAPRV
201: LNLNNSEYFS GPYGENVVFV ANDWHTAVLP CYLKSMYKQN GIYVNAKVAF CIHNIAYQGR FPRVDFELLN LPESFMPSFD FVDGHVKPVV GRKINWMKAG
301: ITECDVVLTV SPHYVKELTS GPEKGVELDG VLRAKPLETG IVNGMDVIDW NPATDKYISV KYNATTVAEA RALNKEILQA EVGLPVDSSI PVIVFIGRLE
401: EQKGSDILIA AIPEFLEENV QIIVLGTGKK KMEEELMLLE AKYPQNARGI AKFNVPLAHM MFAGANFIIV PSRFEPCGLI QLQGMRYGVI PICSSTGGLV
501: DTVSEGVTGF HMGSFNVEFE TVDPADVAAV ASNVTRALKQ YKTPSFHAMV QNCMAQDLSW KGPAKKWEEA LLGLGVEGSQ PGIEGEEIAP LAKQNVATP

Best Arabidopsis Sequence Match ( AT1G32900.1 )
(BLAST)

001: MATVTASSNF VSRTSLFNNH GASSCSDVAQ ITLKGQSLTH CGLRSFNMVD NLQRRSQAKP VSAKSSKRSS KVKTAGKIVC EKGMSVIFIG AEVGPWSKTG
101: GLGDVLGGLP PALAARGHRV MTICPRYDQY KDAWDTCVVV QIKVGDKVEN VRFFHCYKRG VDRVFVDHPI FLAKVVGKTG SKIYGPITGV DYNDNQLRFS
201: LLCQAALEAP QVLNLNSSKY FSGPYGEDVV FVANDWHTAL LPCYLKSMYQ SRGVYMNAKV VFCIHNIAYQ GRFAFDDYSL LNLPISFKSS FDFMDGYEKP
301: VKGRKINWMK AAILEAHRVL TVSPYYAQEL ISGVDRGVEL HKYLRMKTVS GIINGMDVQE WNPSTDKYID IKYDITTVTD AKPLIKEALQ AAVGLPVDRD
401: VPVIGFIGRL EEQKGSDILV EAISKFMGLN VQMVILGTGK KKMEAQILEL EEKFPGKAVG VAKFNVPLAH MITAGADFII VPSRFEPCGL IQLHAMRYGT
501: VPIVASTGGL VDTVKDGYTG FHIGRFNVKC EVVDPDDVIA TAKAVTRAVA VYGTSAMQEM VKNCMDQDFS WKGPARLWEK VLLSLNVAGS EAGTEGEEIA
601: PLAKENVATP

Arabidopsis Description

GBSS1Granule-bound starch synthase 1, chloroplastic/amyloplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9MAQ0]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.