CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY71840	Canola	plastid	78.01	98.68
GSMUA_Achr1P16610_001	Banana	plastid	47.12	59.02
Bra010189.1-P	Field mustard	nucleus	96.34	50.27
AT1G32900.1	Thale cress	plastid	73.04	45.74
VIT_02s0025g02790.t01	Wine grape	plastid	60.47	38.18
KRG92546	Soybean	plastid	57.33	36.2
KRH34245	Soybean	plastid	57.33	36.02
GSMUA_Achr1P06140_001	Banana	plastid	56.81	35.23
GSMUA_Achr9P20780_001	Banana	plastid	55.76	34.69
GSMUA_Achr1P08190_001	Banana	cytosol, plastid	55.76	34.58
HORVU7Hr1G012380.5	Barley	plastid	51.05	32.34
Os07t0412100-01	Rice	plastid	51.31	32.24
Zm00001d045462_P001	Maize	plastid	51.31	32.18
Zm00001d033937_P002	Maize	plastid	51.31	32.18
TraesCS4A01G418200.1	Wheat	plastid	50.79	32.07
HORVU2Hr1G090980.3	Barley	plastid	49.74	32.04
EER98410	Sorghum	plastid	50.79	31.96
TraesCS2A01G373600.1	Wheat	plastid	50.0	31.89
TraesCS7D01G064300.1	Wheat	plastid	50.26	31.79
EER87785	Sorghum	plastid	50.52	31.74
TraesCS2D01G369800.1	Wheat	plastid	49.74	31.72
TraesCS2B01G390700.1	Wheat	plastid	49.74	31.72
TraesCS7A01G070100.1	Wheat	plastid	49.74	31.46
Os06t0133000-02	Rice	plastid	49.48	31.03
Zm00001d019479_P004	Maize	plastid	50.79	30.99
CDY55806	Canola	plastid	29.06	20.07
Zm00001d033690_P001	Maize	cytosol, plastid	16.23	18.24
CDY37538	Canola	plastid	30.1	16.99
Zm00001d027242_P002	Maize	plastid	25.65	16.72
CDY43274	Canola	plastid	30.1	16.48
CDY34693	Canola	endoplasmic reticulum, golgi	17.02	16.33
CDX80428	Canola	plastid	27.75	16.28
CDX88091	Canola	plastid	27.49	16.13
CDY34695	Canola	plastid	5.76	15.38
CDY45619	Canola	plastid	13.35	7.74
CDX76534	Canola	plastid	20.16	7.55
CDY08902	Canola	plastid	20.16	7.55
CDY08760	Canola	plastid	13.35	7.43
CDY21007	Canola	plastid	14.14	5.08
CDY31209	Canola	plastid	14.14	5.04
CDY49799	Canola	mitochondrion	14.14	4.98
CDX97980	Canola	plastid	14.14	4.95
CDY21006	Canola	nucleus	1.05	1.98
Zm00001d029360_P001	Maize	cytosol	1.05	1.6
GSMUA_Achr1P16620_001	Banana	cytosol	0.0	0.0

Protein Annotations

EnsemblPlants:CDX73274	EnsemblPlantsGene:GSBRNA2T00106331001	Gene3D:3.40.50.2000	InterPro:Starch_synth_cat_dom	KEGG:00500+2.4.1.21	MetaCyc:PWY-622
PANTHER:PTHR12526	PANTHER:PTHR12526:SF383	PFAM:PF08323	ProteinID:CDX73274	ProteinID:CDX73274.1	SEG:seg
SUPFAM:SSF53756	UniParc:UPI0004EEEFF8	UniPathway:UPA00164	MapMan:50.2.4	:	:

Description

BnaC05g28320D

Coordinates

chrLK031798:-:576289..578334

Molecular Weight (calculated)

42053.7 Da

IEP (calculated)

9.931

GRAVY (calculated)

-0.122

Length

382 amino acids

Sequence
(BLAST)

001: MEIASIGNST TVITPRVKFG QSSFHSPLYI NGPPSSSFSP HLSRSLITSS SVERVSLSRK MASVTASHFV SLVNNNHGGA SGSEANANLS QINFKCQSTT
101: HCGLRSFNMV DRLQRRCQAK AVSAKSSKGL QQNAPKAKRV GKIVCEKGMS MIFIGAEVGP WSKTGGLGDV LGGLPPALAA RGHRVMTVCP RYDQYKDAWD
201: TCVVVQIKVG DKVEEVRFFH CYKRGVDRVF VDHPLFLAKV VGKTGSKIYG PITGVDYTDN QLRFSLLCQA ALEAPRVLNL NSSKYFSGPY GEDVVFVAND
301: WHTALLPCYL KSMYQSRGIY MNAKVVFCIH NIAYQGRFAF DDFSLLNLPD SFKSSFDFMD GYEKPLKGRK INWMKAAILA IP

Best Arabidopsis Sequence Match ( AT1G32900.1 )
(BLAST)

001: MATVTASSNF VSRTSLFNNH GASSCSDVAQ ITLKGQSLTH CGLRSFNMVD NLQRRSQAKP VSAKSSKRSS KVKTAGKIVC EKGMSVIFIG AEVGPWSKTG
101: GLGDVLGGLP PALAARGHRV MTICPRYDQY KDAWDTCVVV QIKVGDKVEN VRFFHCYKRG VDRVFVDHPI FLAKVVGKTG SKIYGPITGV DYNDNQLRFS
201: LLCQAALEAP QVLNLNSSKY FSGPYGEDVV FVANDWHTAL LPCYLKSMYQ SRGVYMNAKV VFCIHNIAYQ GRFAFDDYSL LNLPISFKSS FDFMDGYEKP
301: VKGRKINWMK AAILEAHRVL TVSPYYAQEL ISGVDRGVEL HKYLRMKTVS GIINGMDVQE WNPSTDKYID IKYDITTVTD AKPLIKEALQ AAVGLPVDRD
401: VPVIGFIGRL EEQKGSDILV EAISKFMGLN VQMVILGTGK KKMEAQILEL EEKFPGKAVG VAKFNVPLAH MITAGADFII VPSRFEPCGL IQLHAMRYGT
501: VPIVASTGGL VDTVKDGYTG FHIGRFNVKC EVVDPDDVIA TAKAVTRAVA VYGTSAMQEM VKNCMDQDFS WKGPARLWEK VLLSLNVAGS EAGTEGEEIA
601: PLAKENVATP

Arabidopsis Description

GBSS1Granule-bound starch synthase 1, chloroplastic/amyloplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9MAQ0]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.