CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 11

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH34245	Soybean	plastid	94.55	94.08
VIT_02s0025g02790.t01	Wine grape	plastid	72.89	72.89
KRH47803	Soybean	nucleus	72.4	70.76
KRH06370	Soybean	nucleus, plastid	71.57	69.95
AT1G32900.1	Thale cress	plastid	70.25	69.67
GSMUA_Achr1P06140_001	Banana	plastid	68.93	67.69
CDY71840	Canola	plastid	33.72	67.55
HORVU2Hr1G090980.3	Barley	plastid	65.12	66.44
Os07t0412100-01	Rice	plastid	65.79	65.46
GSMUA_Achr1P08190_001	Banana	cytosol, plastid	66.61	65.42
EER98410	Sorghum	plastid	65.45	65.24
TraesCS2A01G373600.1	Wheat	plastid	64.3	64.94
TraesCS2B01G390700.1	Wheat	plastid	64.3	64.94
TraesCS2D01G369800.1	Wheat	plastid	64.3	64.94
GSMUA_Achr9P20780_001	Banana	plastid	65.45	64.5
Zm00001d019479_P004	Maize	plastid	66.28	64.06
HORVU7Hr1G012380.5	Barley	plastid	63.14	63.35
EER87785	Sorghum	plastid	62.64	62.34
TraesCS4A01G418200.1	Wheat	plastid	62.31	62.31
TraesCS7A01G070100.1	Wheat	plastid	62.15	62.25
Zm00001d033937_P002	Maize	plastid	62.64	62.23
Zm00001d045462_P001	Maize	plastid	62.64	62.23
Os06t0133000-02	Rice	plastid	62.64	62.23
TraesCS7D01G064300.1	Wheat	plastid	61.82	61.92
GSMUA_Achr1P16610_001	Banana	plastid	30.41	60.33
Bra010189.1-P	Field mustard	nucleus	71.41	59.02
CDX73274	Canola	plastid	36.2	57.33
Zm00001d033690_P001	Maize	cytosol, plastid	31.07	55.29
Zm00001d029360_P001	Maize	cytosol	22.81	55.2
GSMUA_Achr1P16620_001	Banana	cytosol	20.17	54.46
Zm00001d027242_P002	Maize	plastid	42.31	43.69
KRH01182	Soybean	cytosol	19.17	43.61
KRH53506	Soybean	plastid	35.21	33.6
KRH64431	Soybean	plastid	35.04	32.57
KRH18473	Soybean	plastid	36.53	28.48
KRG93537	Soybean	plastid	36.2	28.29
KRH15937	Soybean	plastid	5.95	27.69
KRH16258	Soybean	extracellular	6.12	27.21
KRH39530	Soybean	cytosol	8.6	18.91
KRH58438	Soybean	nucleus	27.27	16.68
KRH42312	Soybean	nucleus	26.78	16.36
KRH74428	Soybean	plastid	17.52	15.5
KRH51091	Soybean	plastid	25.12	14.05
KRH11434	Soybean	plastid	24.3	12.61
KRH20852	Soybean	plastid	23.8	12.53

Protein Annotations

KEGG:00500+2.4.1.21	EntrezGene:100787590	MapMan:3.2.2.4.5	Gene3D:3.40.50.2000	EMBL:ACUP02012761	EnsemblPlantsGene:GLYMA_20G218100
GO:GO:0003674	GO:GO:0003824	GO:GO:0004373	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0009011	GO:GO:0009058
GO:GO:0009501	GO:GO:0009507	GO:GO:0009536	GO:GO:0009987	GO:GO:0016740	GO:GO:0016757
GO:GO:0019252	InterPro:GS/SS	InterPro:Glyco_trans_1	UniProt:I1NII0	EnsemblPlants:KRG92546	ProteinID:KRG92546
ProteinID:KRG92546.1	HAMAP:MF_00484	PFAM:PF00534	PFAM:PF08323	PANTHER:PTHR12526	PANTHER:PTHR12526:SF383
MetaCyc:PWY-622	SUPFAM:SSF53756	InterPro:Starch_synth_cat_dom	TIGRFAMs:TIGR02095	UniParc:UPI000233DCAD	SEG:seg

Description

hypothetical protein

Coordinates

chr20:-:45383661..45388275

Molecular Weight (calculated)

66500.9 Da

IEP (calculated)

8.193

GRAVY (calculated)

-0.197

Length

605 amino acids

Sequence
(BLAST)

001: MATVSYAVSG SACQSHRGAS RTEAKVNYSA QVSLNCQGLR SLNKLHVRTT RAAKTKTLLS AKSNKSGREG VLGRIECGMN LIFVGTEVAP WSKTGGLGDV
101: LGGLPPALAG NGHRVMTVSP RYDQYKDAWD TSVTVEVKIG DRIETVRFFH CYKRGVDRVF VDHPCFLEKV WGKTGSKLYG PSAGVDYEDN QLRFSLLCQA
201: ALEAPRVLNL NSSKYFSGPY GEDVIFIAND WHTALLPCYL KSMYQTKGIY KNAKVAYCIH NIAYQGRHSF ADFSLLNLPN KFKSSFDFTD GHVKPVKGRK
301: LNWMKAAILE SDRVLTVSPY YAQELVTGEE RGVELDNVIR SRGITGIVNG MDNREWSPKT DKFIDLHYDA TTVTEAKSLL KEALQAEVGL PVDRNIPLIG
401: FIGRLEEQKG SDILVEAIPK FIDQNVQIMI LGTGKKIMEK QIEQLEKIYP DKARGVAKFN GPLAHKIIAG ADFIVIPSRF EPCGLVQLHA MPYGTVPIVS
501: STGGLVDTVQ EGYTGFHMGA FNVECEAVDP VDVEKLATTV KRALGTYGTP AMTQMIQNCM SQDFSWKGPA KHWEKVLLSL EVAGSEPGID GDEIAPLAKE
601: NVATP

Best Arabidopsis Sequence Match ( AT1G32900.1 )
(BLAST)

001: MATVTASSNF VSRTSLFNNH GASSCSDVAQ ITLKGQSLTH CGLRSFNMVD NLQRRSQAKP VSAKSSKRSS KVKTAGKIVC EKGMSVIFIG AEVGPWSKTG
101: GLGDVLGGLP PALAARGHRV MTICPRYDQY KDAWDTCVVV QIKVGDKVEN VRFFHCYKRG VDRVFVDHPI FLAKVVGKTG SKIYGPITGV DYNDNQLRFS
201: LLCQAALEAP QVLNLNSSKY FSGPYGEDVV FVANDWHTAL LPCYLKSMYQ SRGVYMNAKV VFCIHNIAYQ GRFAFDDYSL LNLPISFKSS FDFMDGYEKP
301: VKGRKINWMK AAILEAHRVL TVSPYYAQEL ISGVDRGVEL HKYLRMKTVS GIINGMDVQE WNPSTDKYID IKYDITTVTD AKPLIKEALQ AAVGLPVDRD
401: VPVIGFIGRL EEQKGSDILV EAISKFMGLN VQMVILGTGK KKMEAQILEL EEKFPGKAVG VAKFNVPLAH MITAGADFII VPSRFEPCGL IQLHAMRYGT
501: VPIVASTGGL VDTVKDGYTG FHIGRFNVKC EVVDPDDVIA TAKAVTRAVA VYGTSAMQEM VKNCMDQDFS WKGPARLWEK VLLSLNVAGS EAGTEGEEIA
601: PLAKENVATP

Arabidopsis Description

GBSS1Granule-bound starch synthase 1, chloroplastic/amyloplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9MAQ0]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.