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Soybean
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • plastid 5
  • mitochondrion 5
  • nucleus 1
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:mitochondrion, nucleus, plastid
BaCelLo:plastid
ChloroP:plastid
EpiLoc:plastid
iPSORT:mitochondrion
MultiLoc:mitochondrion
Plant-mPloc:nucleus
Predotar:mitochondrion
PProwler:mitochondrion
TargetP:mitochondrion
WoLF PSORT:plastid
YLoc:plastid
nucleus: 21132161
msms PMID: 21132161 doi
B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick
Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
KRH58438 Soybean nucleus 94.14 94.24
GSMUA_Achr3P16350_001 Banana endoplasmic reticulum, vacuole 16.06 71.95
VIT_10s0003g02880.t01 Wine grape plastid 70.0 68.55
TraesCS1A01G353300.1 Wheat cytosol 45.15 65.16
PGSC0003DMT400021444 Potato plastid 65.86 65.13
Solyc02g071040.2.1 Tomato nucleus 65.76 65.03
Bra021017.1-P Field mustard plastid 65.96 64.02
CDX76534 Canola plastid 65.86 63.92
CDY08902 Canola plastid 65.25 63.33
AT4G18240.1 Thale cress plastid 66.46 63.27
GSMUA_Achr8P27560_001 Banana plastid 57.98 61.06
TraesCS1B01G368500.1 Wheat plastid 53.03 57.5
TraesCS1D01G356900.1 Wheat plastid 52.93 57.39
Os05t0533600-02 Rice plastid 52.63 56.69
GSMUA_Achr3P16340_001 Banana plastid 41.72 56.34
OQU78343 Sorghum plastid 51.41 56.0
HORVU1Hr1G080950.5 Barley plastid 52.93 54.81
Zm00001d010821_P002 Maize plastid 50.3 54.79
Os01t0720600-01 Rice plastid 52.32 53.13
KRH01182 Soybean cytosol 8.28 30.83
KRH74428 Soybean plastid 21.21 30.7
KRH39530 Soybean cytosol 7.58 27.27
KRH34245 Soybean plastid 16.67 27.14
KRH06370 Soybean nucleus, plastid 16.87 26.98
KRG92546 Soybean plastid 16.36 26.78
KRH47803 Soybean nucleus 16.67 26.66
KRH53506 Soybean plastid 16.77 26.18
KRH64431 Soybean plastid 16.87 25.65
KRH51091 Soybean plastid 27.68 25.32
KRH20852 Soybean plastid 28.28 24.37
KRH11434 Soybean plastid 28.38 24.1
KRH16258 Soybean extracellular 3.23 23.53
KRH18473 Soybean plastid 18.08 23.07
KRG93537 Soybean plastid 17.68 22.61
KRH15937 Soybean plastid 2.22 16.92
Protein Annotations
KEGG:00500+2.4.1.21EntrezGene:100804775MapMan:3.2.2.4.4Gene3D:3.40.50.2000EMBL:ACUP02004798ncoils:Coil
EnsemblPlantsGene:GLYMA_08G082600GO:GO:0003674GO:GO:0003824GO:GO:0004373GO:GO:0005575GO:GO:0005622
GO:GO:0005623GO:GO:0005737GO:GO:0005975GO:GO:0008150GO:GO:0008152GO:GO:0009011
GO:GO:0009058GO:GO:0009501GO:GO:0009507GO:GO:0009536GO:GO:0009987GO:GO:0016740
GO:GO:0016757GO:GO:0019252InterPro:GS/SSInterPro:Glyco_trans_1UniProt:K7L5I8EnsemblPlants:KRH42312
ProteinID:KRH42312ProteinID:KRH42312.1ProteinID:KRH42313.1ProteinID:KRH42314.1HAMAP:MF_00484PFAM:PF00534
PFAM:PF08323PANTHER:PTHR12526PANTHER:PTHR12526:SF341MetaCyc:PWY-622SUPFAM:SSF53756InterPro:Starch_synth_cat_dom
TIGRFAMs:TIGR02095UniParc:UPI00023C6283SEG:seg:::
Description
hypothetical protein
Coordinates
chr8:+:6255669..6264833
Molecular Weight (calculated)
111876.0 Da
IEP (calculated)
5.584
GRAVY (calculated)
-0.467
Length
990 amino acids
Sequence
(BLAST)
001: MASKLRTCFM CWNLSGFNCV NHHNGRNRVV RVSFPASCEM RHRATFSSQH KRQQIKPSAE GGLRQNQDEE DDAAEVSLNN DDSVENLNDA TAPLAINING
101: AEQAEQLSGR QLEDLLGMIK NAEKNILLLN EARVRSLEDL EKILAEKEAL QGEINVLETR LAETDAQIKV ANQEKIHVEL LEGQLEKLRN ELAQKESTEG
201: KYSELHDLQN GGLSDANPLS HNDSIHSLTE ELNSLRAENA SLKNTIESFK TQLSDTKNND ERLVALEKER SSLESALKDL ESKLSISQDD VSKISTLTVE
301: YKDLWDKVEN LQSLLDKATK QADQAVIVLQ QNQDLRRKVD KLEESLEEAN IYKLSSDKLQ KYSELMQQKL KLLEDRLQKT DEEINSYVQL YQQSVKEFQD
401: TLDTLKEESK KGNLEEPVED MPWEFWSQLL LLIDGWKLEK KISVDDASLL REKVWKRDRR IIDTYIACKK QSEQEAISAF LGLLSSATSP GLHVIHIAAE
501: MAPVAKVGGL GDVVSGLGKA LQKKGHLVEI VLPKYDCMQY DRVCDLRALD VLIDSYFDRQ LYKNKIWVGT VEGLPVYFIE PHHPDKFFWR GEFYGERDDF
601: RRFSFFSRAA LEFLLRAGKK PDIIHCHDWQ TAFIAPLYWE IFAPKKGLNS ARICFTCHNF EYQGTAAASE LESCGLESHR LNRKDRMQDN SSHDRVNSVK
701: GGIVFSNIVT TVSPTYAQEV RTEEGGRGLH STLSVHSKKL IGIINGIDTD AWNPATDAFL PVQYNATDLQ GKAENKQALG RNLGLSSTDV RRPLVGCITR
801: LVPQKGVHLI RHAIYLTLEL GGQFVLLGSS PVPHIQKEFE GIANHFQNHD HIRLILKYDE SLSHAIYAAS DMFIIPSIFE PCGLTQMISM RYGAIPIVRK
901: TGGLNDSVFD VDDDTIPSQF RNGFTFVNAD EQGLNGALVR AFNLFNNNPE GWKQLVQKDM NIDFSWETSS AQYEELYLKS VARAKAAKGA
Best Arabidopsis Sequence Match ( AT4G18240.1 )
(BLAST)
0001: MTTKLSSFCF LTHGLAGISC EREHGSSRRF FYLPSRRLVS TSCKMRQQRG FDSSKRQEVK KGSPKPILSI NSGLQSNNDE ESDLENGSAD SVPSLKSDAE
0101: KGSSIHGSID MNHADENLEK KDDIQTTEVT RRKSKTAKKK GESIHATIDI GHDDGKNLDN ITVPEVAKAL SLNKSEGEQI SDGQFGELMT MIRSAEKNIL
0201: RLDEARATAL DDLNKILSDK EALQGEINVL EMKLSETDER IKTAAQEKAH VELLEEQLEK LRHEMISPIE SDGYVLALSK ELETLKLENL SLRNDIEMLK
0301: SELDSVKDTG ERVVVLEKEC SGLESSVKDL ESKLSVSQED VSQLSTLKIE CTDLWAKVET LQLLLDRATK QAEQAVIVLQ QNQDLRNKVD KIEESLKEAN
0401: VYKESSEKIQ QYNELMQHKV TLLEERLEKS DAEIFSYVQL YQESIKEFQE TLESLKEESK KKSRDEPVDD MPWDYWSRLL LTVDGWLLEK KIASNDADLL
0501: RDMVWKKDRR IHDTYIDVKD KNERDAISAF LKLVSSPTSS GLYVVHIAAE MAPVAKVGGL GDVVAGLGKA LQRKGHLVEI ILPKYDCMQY DRVRDLRALD
0601: TVVESYFDGK LYKNKIWIGT VEGLPVHFIE PQHPSKFFWR GQFYGEQDDF RRFSYFSRAA LELLLQSGKK PDIIHCHDWQ TAFVAPLYWD LYAPKGLDSA
0701: RICFTCHNFE YQGTASASEL GSCGLDVNQL NRPDRMQDHS SGDRVNPVKG AIIFSNIVTT VSPTYAQEVR TAEGGKGLHS TLNFHSKKFI GILNGIDTDS
0801: WNPATDPFLK AQFNAKDLQG KEENKHALRK QLGLSSAESR RPLVGCITRL VPQKGVHLIR HAIYRTLELG GQFVLLGSSP VPHIQREFEG IEQQFKSHDH
0901: VRLLLKYDEA LSHTIYAASD LFIIPSIFEP CGLTQMIAMR YGSIPIARKT GGLNDSVFDI DDDTIPTQFQ NGFTFQTADE QGFNYALERA FNHYKKDEEK
1001: WMRLVEKVMS IDFSWGSSAT QYEELYTRSV SRARAVPNRT
Arabidopsis Description
SS4Probable starch synthase 4, chloroplastic/amyloplastic [Source:UniProtKB/Swiss-Prot;Acc:Q0WVX5]
SUBAcon: [plastid]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.