Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 8
- cytosol 1
- nucleus 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
| nucleus:
28394025
|
msms PMID:
28394025
doi
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400021444 | Potato | plastid | 95.5 | 95.5 |
| GSMUA_Achr3P16350_001 | Banana | endoplasmic reticulum, vacuole | 15.98 | 72.4 |
| KRH58438 | Soybean | nucleus | 65.93 | 66.73 |
| VIT_10s0003g02880.t01 | Wine grape | plastid | 66.93 | 66.27 |
| KRH42312 | Soybean | nucleus | 65.03 | 65.76 |
| TraesCS1A01G353300.1 | Wheat | cytosol | 43.46 | 63.41 |
| Bra021017.1-P | Field mustard | plastid | 63.14 | 61.96 |
| CDX76534 | Canola | plastid | 63.04 | 61.86 |
| GSMUA_Achr8P27560_001 | Banana | plastid | 57.64 | 61.38 |
| AT4G18240.1 | Thale cress | plastid | 63.64 | 61.25 |
| CDY08902 | Canola | plastid | 62.34 | 61.18 |
| GSMUA_Achr3P16340_001 | Banana | plastid | 42.26 | 57.71 |
| Os05t0533600-02 | Rice | plastid | 52.45 | 57.13 |
| OQU78343 | Sorghum | plastid | 51.85 | 57.1 |
| TraesCS1D01G356900.1 | Wheat | plastid | 51.45 | 56.41 |
| Zm00001d010821_P002 | Maize | plastid | 51.15 | 56.33 |
| TraesCS1B01G368500.1 | Wheat | plastid | 51.35 | 56.3 |
| HORVU1Hr1G080950.5 | Barley | plastid | 51.65 | 54.08 |
| Os01t0720600-01 | Rice | plastid | 51.55 | 52.92 |
| Solyc07g042830.2.1 | Tomato | plastid | 22.78 | 37.13 |
| Solyc02g091760.1.1 | Tomato | cytosol | 6.69 | 35.83 |
| Solyc02g091770.1.1 | Tomato | mitochondrion | 9.89 | 32.78 |
| Solyc08g083320.2.1 | Tomato | plastid | 16.38 | 27.24 |
| Solyc03g083090.2.1 | Tomato | plastid | 17.18 | 26.83 |
| Solyc02g088000.2.1 | Tomato | nucleus, plastid | 18.68 | 24.35 |
| Solyc02g080570.2.1 | Tomato | nucleus, plastid | 28.67 | 23.33 |
Protein Annotations
| KEGG:00500+2.4.1.21 | MapMan:3.2.2.4.4 | Gene3D:3.40.50.2000 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003824 |
| GO:GO:0004373 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005975 |
| GO:GO:0005982 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009011 | GO:GO:0009058 | GO:GO:0009507 |
| GO:GO:0009536 | GO:GO:0009987 | GO:GO:0016740 | GO:GO:0019252 | InterPro:GS/SS | InterPro:Glyco_trans_1 |
| UniProt:K4B880 | HAMAP:MF_00484 | PFAM:PF00534 | PFAM:PF08323 | PANTHER:PTHR12526 | PANTHER:PTHR12526:SF341 |
| SUPFAM:SSF53756 | EnsemblPlantsGene:Solyc02g071040.2 | EnsemblPlants:Solyc02g071040.2.1 | InterPro:Starch_synth_cat_dom | TIGRFAMs:TIGR02095 | UniParc:UPI0002768A36 |
| SEG:seg | : | : | : | : | : |
Description
Probable starch synthase 4, chloroplastic/amyloplastic [Source:Projected from Arabidopsis thaliana (AT4G18240) UniProtKB/Swiss-Prot;Acc:Q0WVX5]
Coordinates
chr2:-:40527222..40537166
Molecular Weight (calculated)
113875.0 Da
IEP (calculated)
5.668
GRAVY (calculated)
-0.508
Length
1001 amino acids
Sequence
(BLAST)
(BLAST)
0001: MEMKISNCFP TQKWCGGASL SRQVNVRFYP LPSQRLPPAS GKMRQRRNFS LQNKKKQTKT INIERPPDVD LQLSDDIDSD TEKMSKQSLS NSNQEVPIEE
0101: NVDTSTETKS SDESTYSSVD SNEEGQPSSV HLKDLIGMIR NAEKNIHLLN EARVHALEEL QKVLGEKEDL HGKINILEMK LAETDARLRV ASQEKIHVEL
0201: LEDQLGKLKN ELSSSRGSEE NVLHVNNSVP LSRSDLVNSL SEQCDSLRKE NMLLKQDLQS MKSELSLVKE TDERILMLEK ERSVLESSLS ELESKLAASQ
0301: EGVSELSALK LECKNLYEKV EHLQALLAKA TKQADQAISV LQQNQELRKK VDRLEESLEE ASIYKLSSEK LQQYNEQMQQ KIKLLDERLQ RSDEEIQSYV
0401: QLHQDSVKEF QDTLDNLKNE TKKKALDEPV DEMPSEFWSR LLLMIEGWSM EKKISKDDAK LLRELVWKRD RRICDAYMSC KEKNDREILA AFLRFTSSPT
0501: RPGLHIIHIA AEMAPVAKVG GLGDVVAGLG KALQEKGHLV EIVLPKYDCM QYESIKDMKV LDVVVESYFD GRLYNNNIWT GTVEGLPVYF IEPQHPGKFF
0601: CRGQLYGEHD DFKRFSFFSR VALEFLLQAE KRPDIIHCHD WQTAFVAPLY WEIYVPKGLD SARICFTCHN FEYQGTAPAS ELTSCGLDAY HLNRPDRMQD
0701: NSANDRINPV KGAIVFSNIV TTVSPTYAQE VRSVQGGKGL HATINSHSKK FAGILNGIDT AAWNPASDNF LKVQYSASDI DGKIENKEAL RRLLGLSSSD
0801: FRQPLVGCIT RLVPQKGVHL IRHAVYRTLE LGGQFVLLGS SPVPHIQREF EDIANHFQNH EHARLVLKYD EALSHLIYAA SDMLIIPSIF EPCGLTQMIA
0901: MRYGSIPIAR KTGGLNDSVF DVDDDSIPLQ FRNGFTFATA DEQGFNNALE RAFNYYMNNY EIWKEFVQKD MSIDFSWDSS ASQYEELYEK AVLRARAASR
1001: N
0101: NVDTSTETKS SDESTYSSVD SNEEGQPSSV HLKDLIGMIR NAEKNIHLLN EARVHALEEL QKVLGEKEDL HGKINILEMK LAETDARLRV ASQEKIHVEL
0201: LEDQLGKLKN ELSSSRGSEE NVLHVNNSVP LSRSDLVNSL SEQCDSLRKE NMLLKQDLQS MKSELSLVKE TDERILMLEK ERSVLESSLS ELESKLAASQ
0301: EGVSELSALK LECKNLYEKV EHLQALLAKA TKQADQAISV LQQNQELRKK VDRLEESLEE ASIYKLSSEK LQQYNEQMQQ KIKLLDERLQ RSDEEIQSYV
0401: QLHQDSVKEF QDTLDNLKNE TKKKALDEPV DEMPSEFWSR LLLMIEGWSM EKKISKDDAK LLRELVWKRD RRICDAYMSC KEKNDREILA AFLRFTSSPT
0501: RPGLHIIHIA AEMAPVAKVG GLGDVVAGLG KALQEKGHLV EIVLPKYDCM QYESIKDMKV LDVVVESYFD GRLYNNNIWT GTVEGLPVYF IEPQHPGKFF
0601: CRGQLYGEHD DFKRFSFFSR VALEFLLQAE KRPDIIHCHD WQTAFVAPLY WEIYVPKGLD SARICFTCHN FEYQGTAPAS ELTSCGLDAY HLNRPDRMQD
0701: NSANDRINPV KGAIVFSNIV TTVSPTYAQE VRSVQGGKGL HATINSHSKK FAGILNGIDT AAWNPASDNF LKVQYSASDI DGKIENKEAL RRLLGLSSSD
0801: FRQPLVGCIT RLVPQKGVHL IRHAVYRTLE LGGQFVLLGS SPVPHIQREF EDIANHFQNH EHARLVLKYD EALSHLIYAA SDMLIIPSIF EPCGLTQMIA
0901: MRYGSIPIAR KTGGLNDSVF DVDDDSIPLQ FRNGFTFATA DEQGFNNALE RAFNYYMNNY EIWKEFVQKD MSIDFSWDSS ASQYEELYEK AVLRARAASR
1001: N
0001: MTTKLSSFCF LTHGLAGISC EREHGSSRRF FYLPSRRLVS TSCKMRQQRG FDSSKRQEVK KGSPKPILSI NSGLQSNNDE ESDLENGSAD SVPSLKSDAE
0101: KGSSIHGSID MNHADENLEK KDDIQTTEVT RRKSKTAKKK GESIHATIDI GHDDGKNLDN ITVPEVAKAL SLNKSEGEQI SDGQFGELMT MIRSAEKNIL
0201: RLDEARATAL DDLNKILSDK EALQGEINVL EMKLSETDER IKTAAQEKAH VELLEEQLEK LRHEMISPIE SDGYVLALSK ELETLKLENL SLRNDIEMLK
0301: SELDSVKDTG ERVVVLEKEC SGLESSVKDL ESKLSVSQED VSQLSTLKIE CTDLWAKVET LQLLLDRATK QAEQAVIVLQ QNQDLRNKVD KIEESLKEAN
0401: VYKESSEKIQ QYNELMQHKV TLLEERLEKS DAEIFSYVQL YQESIKEFQE TLESLKEESK KKSRDEPVDD MPWDYWSRLL LTVDGWLLEK KIASNDADLL
0501: RDMVWKKDRR IHDTYIDVKD KNERDAISAF LKLVSSPTSS GLYVVHIAAE MAPVAKVGGL GDVVAGLGKA LQRKGHLVEI ILPKYDCMQY DRVRDLRALD
0601: TVVESYFDGK LYKNKIWIGT VEGLPVHFIE PQHPSKFFWR GQFYGEQDDF RRFSYFSRAA LELLLQSGKK PDIIHCHDWQ TAFVAPLYWD LYAPKGLDSA
0701: RICFTCHNFE YQGTASASEL GSCGLDVNQL NRPDRMQDHS SGDRVNPVKG AIIFSNIVTT VSPTYAQEVR TAEGGKGLHS TLNFHSKKFI GILNGIDTDS
0801: WNPATDPFLK AQFNAKDLQG KEENKHALRK QLGLSSAESR RPLVGCITRL VPQKGVHLIR HAIYRTLELG GQFVLLGSSP VPHIQREFEG IEQQFKSHDH
0901: VRLLLKYDEA LSHTIYAASD LFIIPSIFEP CGLTQMIAMR YGSIPIARKT GGLNDSVFDI DDDTIPTQFQ NGFTFQTADE QGFNYALERA FNHYKKDEEK
1001: WMRLVEKVMS IDFSWGSSAT QYEELYTRSV SRARAVPNRT
0101: KGSSIHGSID MNHADENLEK KDDIQTTEVT RRKSKTAKKK GESIHATIDI GHDDGKNLDN ITVPEVAKAL SLNKSEGEQI SDGQFGELMT MIRSAEKNIL
0201: RLDEARATAL DDLNKILSDK EALQGEINVL EMKLSETDER IKTAAQEKAH VELLEEQLEK LRHEMISPIE SDGYVLALSK ELETLKLENL SLRNDIEMLK
0301: SELDSVKDTG ERVVVLEKEC SGLESSVKDL ESKLSVSQED VSQLSTLKIE CTDLWAKVET LQLLLDRATK QAEQAVIVLQ QNQDLRNKVD KIEESLKEAN
0401: VYKESSEKIQ QYNELMQHKV TLLEERLEKS DAEIFSYVQL YQESIKEFQE TLESLKEESK KKSRDEPVDD MPWDYWSRLL LTVDGWLLEK KIASNDADLL
0501: RDMVWKKDRR IHDTYIDVKD KNERDAISAF LKLVSSPTSS GLYVVHIAAE MAPVAKVGGL GDVVAGLGKA LQRKGHLVEI ILPKYDCMQY DRVRDLRALD
0601: TVVESYFDGK LYKNKIWIGT VEGLPVHFIE PQHPSKFFWR GQFYGEQDDF RRFSYFSRAA LELLLQSGKK PDIIHCHDWQ TAFVAPLYWD LYAPKGLDSA
0701: RICFTCHNFE YQGTASASEL GSCGLDVNQL NRPDRMQDHS SGDRVNPVKG AIIFSNIVTT VSPTYAQEVR TAEGGKGLHS TLNFHSKKFI GILNGIDTDS
0801: WNPATDPFLK AQFNAKDLQG KEENKHALRK QLGLSSAESR RPLVGCITRL VPQKGVHLIR HAIYRTLELG GQFVLLGSSP VPHIQREFEG IEQQFKSHDH
0901: VRLLLKYDEA LSHTIYAASD LFIIPSIFEP CGLTQMIAMR YGSIPIARKT GGLNDSVFDI DDDTIPTQFQ NGFTFQTADE QGFNYALERA FNHYKKDEEK
1001: WMRLVEKVMS IDFSWGSSAT QYEELYTRSV SRARAVPNRT
Arabidopsis Description
SS4Probable starch synthase 4, chloroplastic/amyloplastic [Source:UniProtKB/Swiss-Prot;Acc:Q0WVX5]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.