Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus
Predictor Summary:
Predictor Summary:
- plastid 11
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
| nucleus:
28394025
|
msms PMID:
28394025
doi
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra019836.1-P | Field mustard | endoplasmic reticulum, vacuole | 33.09 | 81.24 |
| GSMUA_Achr11P... | Banana | cytosol, mitochondrion, plastid | 15.04 | 79.4 |
| AT1G11720.2 | Thale cress | mitochondrion, plastid | 60.98 | 68.56 |
| CDY31209 | Canola | plastid | 59.67 | 68.47 |
| CDY49799 | Canola | mitochondrion | 60.24 | 68.29 |
| KRH20852 | Soybean | plastid | 63.33 | 67.8 |
| CDX97980 | Canola | plastid | 59.92 | 67.55 |
| KRH11434 | Soybean | plastid | 62.6 | 66.04 |
| KRH51091 | Soybean | plastid | 58.05 | 65.99 |
| GSMUA_Achr5P00700_001 | Banana | plastid | 54.15 | 59.46 |
| Os04t0624600-01 | Rice | plastid | 55.45 | 56.09 |
| KXG27148 | Sorghum | mitochondrion, plastid | 54.15 | 55.92 |
| Zm00001d002256_P012 | Maize | plastid | 53.98 | 55.89 |
| Bra016818.1-P | Field mustard | cytosol | 59.59 | 55.83 |
| Zm00001d026337_P013 | Maize | plastid | 53.66 | 55.42 |
| VIT_10s0116g01730.t01 | Wine grape | plastid | 65.28 | 52.55 |
| TraesCS2B01G491700.2 | Wheat | plastid | 53.9 | 51.96 |
| TraesCS2A01G468800.1 | Wheat | plastid | 53.82 | 50.65 |
| HORVU2Hr1G106410.9 | Barley | cytosol | 53.98 | 49.96 |
| GSMUA_Achr11P... | Banana | plastid | 40.89 | 49.46 |
| TraesCS2D01G468900.2 | Wheat | endoplasmic reticulum, golgi | 53.66 | 47.04 |
| Os08t0191433-01 | Rice | plastid | 51.46 | 40.76 |
| TraesCS1B01G119300.1 | Wheat | plastid | 51.95 | 39.69 |
| TraesCS1A01G091500.1 | Wheat | plastid | 52.52 | 39.66 |
| HORVU1Hr1G021590.5 | Barley | mitochondrion | 51.3 | 39.61 |
| TraesCS1D01G100100.1 | Wheat | cytosol | 51.87 | 39.55 |
| Zm00001d000002_P002 | Maize | plastid | 52.93 | 38.82 |
| KXG24650 | Sorghum | plastid | 52.6 | 38.42 |
| Solyc07g042830.2.1 | Tomato | plastid | 16.34 | 32.74 |
| Solyc02g071040.2.1 | Tomato | nucleus | 23.33 | 28.67 |
| Solyc02g091760.1.1 | Tomato | cytosol | 3.9 | 25.67 |
| Solyc08g083320.2.1 | Tomato | plastid | 12.2 | 24.92 |
| Solyc02g091770.1.1 | Tomato | mitochondrion | 6.1 | 24.83 |
| Solyc03g083090.2.1 | Tomato | plastid | 12.85 | 24.65 |
| Solyc02g088000.2.1 | Tomato | nucleus, plastid | 14.39 | 23.05 |
Protein Annotations
| KEGG:00500+2.4.1.21 | Gene3D:2.60.40.10 | MapMan:3.2.2.4.3 | Gene3D:3.40.50.2000 | UniProt:C6KI36 | InterPro:CBM25 |
| ncoils:Coil | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004373 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005975 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009011 | GO:GO:0009058 | GO:GO:0009507 | GO:GO:0009536 | GO:GO:0009987 | GO:GO:0016740 |
| GO:GO:0019252 | GO:GO:0030246 | GO:GO:2001070 | EMBL:GQ221265 | InterPro:GS/SS | InterPro:Glyco_trans_1 |
| InterPro:IPR013783 | InterPro:Ig-like_fold | HAMAP:MF_00484 | PFAM:PF00534 | PFAM:PF08323 | PFAM:PF16760 |
| PANTHER:PTHR12526 | PANTHER:PTHR12526:SF341 | SMART:SM01066 | SUPFAM:SSF53756 | EnsemblPlantsGene:Solyc02g080570.2 | EnsemblPlants:Solyc02g080570.2.1 |
| InterPro:Starch_synth_cat_dom | UniParc:UPI0001AB0321 | SEG:seg | : | : | : |
Description
Starch synthase 3, chloroplastic/amyloplastic [Source:Projected from Arabidopsis thaliana (AT1G11720) UniProtKB/Swiss-Prot;Acc:F4IAG2]
Coordinates
chr2:+:44758022..44775339
Molecular Weight (calculated)
139172.0 Da
IEP (calculated)
5.829
GRAVY (calculated)
-0.490
Length
1230 amino acids
Sequence
(BLAST)
(BLAST)
0001: MDVPLPLHRP LSCTSVSNAI THLKIKPFLG FVSHGTTSLS VQSSSWRRDV MVTGVPFPFC ANFSGRRRRK VSTPRSQQSS PKGFVPRKPS GMSTQRKVQK
0101: SNGDKESQST STSKESEISN QKTVEAKVET SDDDTKGVVR DHKFLEDEDE INGSTKSISM SPGRGSSQFV ESEEIGDDDN DAVKLNESKR LEESDFLIDS
0201: VIREQSGSQG ETNDSSKGSH AVGTKFYEIL QVDVEPQQLK EINAGSVEYT GPVASKLLEI TKASDVQHTE SNEIDYLDSN SFFKSDLVEE DDPLTAGTVE
0301: TGDSSLNLRL EIEANLRRQA IERLAEENLL QGIRLFCFPE VVKPDEDVEI FLNRGLSTLK NEPDVLIMGA FNEWRYRSFT TRLTETHLNG DWWSCTIHVP
0401: KEAYRADFVF FNGQDVYDNN DGNDFSITVE GGMQIIDFEN FLLEEKRREQ EKLAKEQAER ERLAEEQRRI EAEKAEIEAD RAQAKDETAK KKKVLQELMA
0501: KATKTRDITW YIEPSEFKCE DKVRLYYNKS SGPLSHAKDL WIHGGYNNWK DGLSIVKKLV KSERIDGDWW YTEVVIPDQA LVLDWVFADG PPKHAIAYDN
0601: NHRQDFHAIV PKQIPEELYW VEEEHQIFKK LQEERRLREA AMRAKAEKTA LLKAETKERT MKSFLLSQKH VVYTEPLDIQ AGSSVTVYYN PANTVLSGKP
0701: EIWFRCSFNR WTHRLGPLPP QKMLPAENGT HVKATVKVPL DAYMMDFVFS EREDGGIFDN KSGMDYHIPV FGGVAKEPPM HIVHIAVEMA PIAKVGGLGD
0801: VVTSLSRAVQ DLNHNVDIIL PKYDCLKMNN VKDFRFHKSY FWGGTEIKVW FGKVEGLSVY FLEPQNGLFW KGCVYGCSND GERFGFFCHA ALEFLLQGGF
0901: SPDIIHCHDW SSAPVAWLFK EQYTHYGLSK SRIVFTIHNL EFGADLIGRA MTHADKATTV SPTYSQEVSG NPVIAPHLHK FHGIVNGIDP DIWDPLNDKF
1001: IPIPYTSENV VEGKTAAKEA LQQKLGLKQA DLPLVGIITR LTHQKGIHLI KHAIWRTLER NGQVVLLGSA PDPRIQNDFV NLANQLHSTY NDRARLCLTY
1101: DEPLSHLIYA GADFILVPSI FEPCGLTQLT AMRYGSIPVV RKTGGLYDTV FDVDHDKERA QQCGLGPNGF SFDGADAAGV DYALNRALSA WYDGRDWFNS
1201: LCKQVMEQDW SWNRPALDYL ELYHAARKLT
0101: SNGDKESQST STSKESEISN QKTVEAKVET SDDDTKGVVR DHKFLEDEDE INGSTKSISM SPGRGSSQFV ESEEIGDDDN DAVKLNESKR LEESDFLIDS
0201: VIREQSGSQG ETNDSSKGSH AVGTKFYEIL QVDVEPQQLK EINAGSVEYT GPVASKLLEI TKASDVQHTE SNEIDYLDSN SFFKSDLVEE DDPLTAGTVE
0301: TGDSSLNLRL EIEANLRRQA IERLAEENLL QGIRLFCFPE VVKPDEDVEI FLNRGLSTLK NEPDVLIMGA FNEWRYRSFT TRLTETHLNG DWWSCTIHVP
0401: KEAYRADFVF FNGQDVYDNN DGNDFSITVE GGMQIIDFEN FLLEEKRREQ EKLAKEQAER ERLAEEQRRI EAEKAEIEAD RAQAKDETAK KKKVLQELMA
0501: KATKTRDITW YIEPSEFKCE DKVRLYYNKS SGPLSHAKDL WIHGGYNNWK DGLSIVKKLV KSERIDGDWW YTEVVIPDQA LVLDWVFADG PPKHAIAYDN
0601: NHRQDFHAIV PKQIPEELYW VEEEHQIFKK LQEERRLREA AMRAKAEKTA LLKAETKERT MKSFLLSQKH VVYTEPLDIQ AGSSVTVYYN PANTVLSGKP
0701: EIWFRCSFNR WTHRLGPLPP QKMLPAENGT HVKATVKVPL DAYMMDFVFS EREDGGIFDN KSGMDYHIPV FGGVAKEPPM HIVHIAVEMA PIAKVGGLGD
0801: VVTSLSRAVQ DLNHNVDIIL PKYDCLKMNN VKDFRFHKSY FWGGTEIKVW FGKVEGLSVY FLEPQNGLFW KGCVYGCSND GERFGFFCHA ALEFLLQGGF
0901: SPDIIHCHDW SSAPVAWLFK EQYTHYGLSK SRIVFTIHNL EFGADLIGRA MTHADKATTV SPTYSQEVSG NPVIAPHLHK FHGIVNGIDP DIWDPLNDKF
1001: IPIPYTSENV VEGKTAAKEA LQQKLGLKQA DLPLVGIITR LTHQKGIHLI KHAIWRTLER NGQVVLLGSA PDPRIQNDFV NLANQLHSTY NDRARLCLTY
1101: DEPLSHLIYA GADFILVPSI FEPCGLTQLT AMRYGSIPVV RKTGGLYDTV FDVDHDKERA QQCGLGPNGF SFDGADAAGV DYALNRALSA WYDGRDWFNS
1201: LCKQVMEQDW SWNRPALDYL ELYHAARKLT
0001: MEVCWQIQRP ASLRPGFQEK GRVKINTFSV GFFPRSISSI ASLESQYKSN GFLHQITASA DFSRKKQGRM AASGPKSSGP RGFGRRTTVG SAQKRTQKKN
0101: GEKDSNATST ATNEVSGISK LPAAKVDVQK QSSVVLNERN VLDRSDIEDG SDRLDKKTTD DDDLLEQKLK LERENLRRKE IETLAAENLA RGDRMFVYPV
0201: IVKPDEDIEV FLNRNLSTLN NEPDVLIMGA FNEWRWKSFT RRLEKTWIHE DWLSCLLHIP KEAYKMDFVF FNGQSVYDNN DSKDFCVEIK GGMDKVDFEN
0301: FLLEEKLREQ EKLAKEEAER ERQKEEKRRI EAQKAAIEAD RAQAKAETQK RRELLQPAIK KAVVSAENVW YIEPSDFKAE DTVKLYYNKR SGPLTNSKEL
0401: WLHGGFNNWV DGLSIVVKLV NAELKDVDPK SGNWWFAEVV VPGGALVIDW VFADGPPKGA FLYDNNGYQD FHALVPQKLP EELYWLEEEN MIFRKLQEDR
0501: RLKEEVMRAK MEKTARLKAE TKERTLKKFL LSQKDVVYTE PLEIQAGNPV TVLYNPANTV LNGKPEVWFR GSFNRWTHRL GPLPPQKMEA TDDESSHVKT
0601: TAKVPLDAYM MDFVFSEKED GGIFDNKNGL DYHLPVVGGI SKEPPLHIVH IAVEMAPIAK VGGLGDVVTS LSRAVQELNH NVDIVFPKYD CIKHNFVKDL
0701: QFNRSYHWGG TEIKVWHGKV EGLSVYFLDP QNGLFQRGCV YGCADDAGRF GFFCHAALEF LLQGGFHPDI LHCHDWSSAP VSWLFKDHYT QYGLIKTRIV
0801: FTIHNLEFGA NAIGKAMTFA DKATTVSPTY AKEVAGNSVI SAHLYKFHGI INGIDPDIWD PYNDNFIPVP YTSENVVEGK RAAKEELQNR LGLKSADFPV
0901: VGIITRLTHQ KGIHLIKHAI WRTLERNGQV VLLGSAPDPR IQNDFVNLAN QLHSSHGDRA RLVLTYDEPL SHLIYAGADF ILVPSIFEPC GLTQLIAMRY
1001: GAVPVVRKTG GLFDTVFDVD HDKERAQAQV LEPNGFSFDG ADAPGVDYAL NRAISAWYDG REWFNSLCKT VMEQDWSWNR PALEYLELYH SARK
0101: GEKDSNATST ATNEVSGISK LPAAKVDVQK QSSVVLNERN VLDRSDIEDG SDRLDKKTTD DDDLLEQKLK LERENLRRKE IETLAAENLA RGDRMFVYPV
0201: IVKPDEDIEV FLNRNLSTLN NEPDVLIMGA FNEWRWKSFT RRLEKTWIHE DWLSCLLHIP KEAYKMDFVF FNGQSVYDNN DSKDFCVEIK GGMDKVDFEN
0301: FLLEEKLREQ EKLAKEEAER ERQKEEKRRI EAQKAAIEAD RAQAKAETQK RRELLQPAIK KAVVSAENVW YIEPSDFKAE DTVKLYYNKR SGPLTNSKEL
0401: WLHGGFNNWV DGLSIVVKLV NAELKDVDPK SGNWWFAEVV VPGGALVIDW VFADGPPKGA FLYDNNGYQD FHALVPQKLP EELYWLEEEN MIFRKLQEDR
0501: RLKEEVMRAK MEKTARLKAE TKERTLKKFL LSQKDVVYTE PLEIQAGNPV TVLYNPANTV LNGKPEVWFR GSFNRWTHRL GPLPPQKMEA TDDESSHVKT
0601: TAKVPLDAYM MDFVFSEKED GGIFDNKNGL DYHLPVVGGI SKEPPLHIVH IAVEMAPIAK VGGLGDVVTS LSRAVQELNH NVDIVFPKYD CIKHNFVKDL
0701: QFNRSYHWGG TEIKVWHGKV EGLSVYFLDP QNGLFQRGCV YGCADDAGRF GFFCHAALEF LLQGGFHPDI LHCHDWSSAP VSWLFKDHYT QYGLIKTRIV
0801: FTIHNLEFGA NAIGKAMTFA DKATTVSPTY AKEVAGNSVI SAHLYKFHGI INGIDPDIWD PYNDNFIPVP YTSENVVEGK RAAKEELQNR LGLKSADFPV
0901: VGIITRLTHQ KGIHLIKHAI WRTLERNGQV VLLGSAPDPR IQNDFVNLAN QLHSSHGDRA RLVLTYDEPL SHLIYAGADF ILVPSIFEPC GLTQLIAMRY
1001: GAVPVVRKTG GLFDTVFDVD HDKERAQAQV LEPNGFSFDG ADAPGVDYAL NRAISAWYDG REWFNSLCKT VMEQDWSWNR PALEYLELYH SARK
Arabidopsis Description
ATSS3SS3 [Source:UniProtKB/TrEMBL;Acc:A0A178W4M9]
SUBAcon: [mitochondrion,plastid]
SUBAcon: [mitochondrion,plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.