CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid

Predictor Summary:

plastid 4
mitochondrion 5

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d026337_P013	Maize	plastid	92.36	92.36
Zm00001d002256_P012	Maize	plastid	91.44	91.67
Os04t0624600-01	Rice	plastid	79.6	77.96
GSMUA_Achr11P...	Banana	cytosol, mitochondrion, plastid	15.2	77.68
Bra019836.1-P	Field mustard	endoplasmic reticulum, vacuole	30.48	72.46
TraesCS2B01G491700.2	Wheat	plastid	77.25	72.1
TraesCS2A01G468800.1	Wheat	plastid	76.74	69.93
HORVU2Hr1G106410.9	Barley	cytosol	76.66	68.7
TraesCS2D01G468900.2	Wheat	endoplasmic reticulum, golgi	76.32	64.79
CDY31209	Canola	plastid	52.64	58.49
KRH51091	Soybean	plastid	53.06	58.41
CDX97980	Canola	plastid	53.4	58.3
CDY49799	Canola	mitochondrion	53.06	58.25
AT1G11720.2	Thale cress	mitochondrion, plastid	53.23	57.95
GSMUA_Achr5P00700_001	Banana	plastid	54.07	57.5
KRH20852	Soybean	plastid	54.91	56.92
KRH11434	Soybean	plastid	54.74	55.92
Solyc02g080570.2.1	Tomato	nucleus, plastid	55.92	54.15
GSMUA_Achr11P...	Banana	plastid	41.06	48.08
Bra016818.1-P	Field mustard	cytosol	52.9	47.98
KXG24650	Sorghum	plastid	64.9	45.9
VIT_10s0116g01730.t01	Wine grape	plastid	57.09	44.5
OQU78343	Sorghum	plastid	20.91	27.39
EES05532	Sorghum	plastid	14.61	24.72
EER98410	Sorghum	plastid	12.43	24.38
EER87785	Sorghum	plastid	12.26	24.01
KXG31317	Sorghum	plastid	13.43	22.92
KXG19354	Sorghum	plastid	12.43	22.87
OQU91730	Sorghum	cytosol	12.85	22.37
KXG19644	Sorghum	plastid	13.43	20.78

Protein Annotations

KEGG:00500+2.4.1.21	MapMan:3.2.2.4.3	Gene3D:3.40.50.2000	UniProt:A0A1B6PN98	InterPro:CBM25	ncoils:Coil
GO:GO:0003674	GO:GO:0003824	GO:GO:0004373	GO:GO:0005488	GO:GO:0016740	GO:GO:0030246
GO:GO:2001070	InterPro:GS/SS	EnsemblPlants:KXG27148	ProteinID:KXG27148	ProteinID:KXG27148.1	HAMAP:MF_00484
PFAM:PF08323	PFAM:PF16760	PANTHER:PTHR12526	PANTHER:PTHR12526:SF345	MetaCyc:PWY-622	SMART:SM01066
EnsemblPlantsGene:SORBI_3006G221000	SUPFAM:SSF53756	InterPro:Starch_synth_cat_dom	UniParc:UPI00081AD899	SEG:seg	:

Description

hypothetical protein

Coordinates

chr6:-:56781695..56790352

Molecular Weight (calculated)

134244.0 Da

IEP (calculated)

5.151

GRAVY (calculated)

-0.557

Length

1191 amino acids

Sequence
(BLAST)

0001: MEMNLRAQSP LCSRGRPALV VRPAAAATGL TLSVMRCSRF TRGELVRCMV SSSDYPKRNP RRTSTSKSKG VASGGYASRP TAESSTKKIE QSSNDEGDFS
0101: RANGSLYGEA TEKASTAEES SQVYFPEDNS SSAERDEAGT EEEADQNQSS VLSSASMDDD SIDRKLDEYR GKISALVSSK PEPSWPASVA GQSESVGGVH
0201: GQDGPIIGSE DHDSSTVDAP IKGRPFAEAV VGYKDFTESA AGKATIENEK EQTVSLEDVV GINTDAEEEL SVSEDDPEVL LRRFQELADE NDSIGNNCFV
0301: FPEVVKADSV IDLYLNRSMS ALASESNVFV KGAFNGWRWN AFTETLHKSE LRGDWWCCKL YIPKQAYRLD FVFFNGDSVY ENNNHNDFFL EIESDIDEHS
0401: FDDFLVEEKQ KELERLDAEE AERKRQAEEE RRRAEERAAM EADRAQAKSE VEKKKEKLRQ MLSSASRYAD NLWYIEPNTY RGGDRVRLYY NRSSRPLMHN
0501: TEIWMHGGYN NWIDGLSIAE KLVKSHEKEG DWWYAEVTLP ERALVLNWVF ADGPPGNARN YDNNGRQDFH AIVPNNISDD IFWVDEEHRI FTRLQQERRE
0601: REGAERIKAE ISAKMKAEMK EKTMRAFLLS QKHIVYTEPL EVRAGTTVDV LYNPSNTVLN GKPEVWFRGS FNRWTHPSGP LPPQKMVKTE NGSHLRTTVR
0701: VPLDAYMMDF VFSESEEGGI YDNRNGIDYH IPVSDSVARE PPMHIVHIAV EMAPIAKVGG LGDVVTSLSR AVQDLGHKVE VILPKYDCLN LSSVKDLHYQ
0801: QSFTWGGTEI KVWFGKVEDL PVYFLEPQNG MFWVGCVYGK NDESRFGFFC HSALEFLLQK GSSPDIIHCH DWSSAPVAWL YKEQYALNGL GNGRIVFTIH
0901: NLEFGAHHIG KAMTHCDKAT TVSDTYSKEV AGHGAIAPHY YKFHGIRNGI DPDIWDPYTD KYIPVHYTSE NVIEGKSAAK KALQQMLGLQ QTDTPVVGII
1001: TRLTVQKGIH LIKHAIYRAL ERNGQVVLLG SAPDPRIQGD FTNLASRLHN EYHGRVKLCL TYDEPLSHLI YAGADFILVP SIFEPCGLTQ LIAMRYGSIP
1101: IVRKTGGLYD TVFDVDNDKD RAQAQGLEPN GFSFEGADSS GVDYALDRAI TTFYDARDWF NSLCKRVMEQ DWSWNRPALD YMELYHSARK N

Best Arabidopsis Sequence Match ( AT1G11720.2 )
(BLAST)

0001: MEVCWQIQRP ASLRPGFQEK GRVKINTFSV GFFPRSISSI ASLESQYKSN GFLHQITASA DFSRKKQGRM AASGPKSSGP RGFGRRTTVG SAQKRTQKKN
0101: GEKDSNATST ATNEVSGISK LPAAKVDVQK QSSVVLNERN VLDRSDIEDG SDRLDKKTTD DDDLLEQKLK LERENLRRKE IETLAAENLA RGDRMFVYPV
0201: IVKPDEDIEV FLNRNLSTLN NEPDVLIMGA FNEWRWKSFT RRLEKTWIHE DWLSCLLHIP KEAYKMDFVF FNGQSVYDNN DSKDFCVEIK GGMDKVDFEN
0301: FLLEEKLREQ EKLAKEEAER ERQKEEKRRI EAQKAAIEAD RAQAKAETQK RRELLQPAIK KAVVSAENVW YIEPSDFKAE DTVKLYYNKR SGPLTNSKEL
0401: WLHGGFNNWV DGLSIVVKLV NAELKDVDPK SGNWWFAEVV VPGGALVIDW VFADGPPKGA FLYDNNGYQD FHALVPQKLP EELYWLEEEN MIFRKLQEDR
0501: RLKEEVMRAK MEKTARLKAE TKERTLKKFL LSQKDVVYTE PLEIQAGNPV TVLYNPANTV LNGKPEVWFR GSFNRWTHRL GPLPPQKMEA TDDESSHVKT
0601: TAKVPLDAYM MDFVFSEKED GGIFDNKNGL DYHLPVVGGI SKEPPLHIVH IAVEMAPIAK VGGLGDVVTS LSRAVQELNH NVDIVFPKYD CIKHNFVKDL
0701: QFNRSYHWGG TEIKVWHGKV EGLSVYFLDP QNGLFQRGCV YGCADDAGRF GFFCHAALEF LLQGGFHPDI LHCHDWSSAP VSWLFKDHYT QYGLIKTRIV
0801: FTIHNLEFGA NAIGKAMTFA DKATTVSPTY AKEVAGNSVI SAHLYKFHGI INGIDPDIWD PYNDNFIPVP YTSENVVEGK RAAKEELQNR LGLKSADFPV
0901: VGIITRLTHQ KGIHLIKHAI WRTLERNGQV VLLGSAPDPR IQNDFVNLAN QLHSSHGDRA RLVLTYDEPL SHLIYAGADF ILVPSIFEPC GLTQLIAMRY
1001: GAVPVVRKTG GLFDTVFDVD HDKERAQAQV LEPNGFSFDG ADAPGVDYAL NRAISAWYDG REWFNSLCKT VMEQDWSWNR PALEYLELYH SARK

Arabidopsis Description

ATSS3SS3 [Source:UniProtKB/TrEMBL;Acc:A0A178W4M9]
SUBAcon: [mitochondrion,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.