CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 11

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EER88112
EES07255

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G01180.1	EER88112	AT3G47620.1	21798944
AT3G01180.1	EES07255	AT3G47620.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d018033_P001	Maize	plastid	89.2	91.28
Zm00001d052263_P001	Maize	plastid	89.35	89.86
Os02t0744700-01	Rice	nucleus	76.42	79.47
KRH01182	Soybean	cytosol	29.97	79.32
TraesCS6D01G287000.1	Wheat	plastid	72.87	77.38
HORVU6Hr1G075950.4	Barley	plastid	73.86	77.04
TraesCS6B01G336400.1	Wheat	plastid	72.59	75.82
TraesCS6A01G307800.1	Wheat	plastid	72.16	75.15
CDY34695	Canola	plastid	14.2	69.93
Bra021486.1-P	Field mustard	endoplasmic reticulum	19.6	65.4
CDY43274	Canola	plastid	58.95	59.46
CDY37538	Canola	plastid	56.25	58.49
KXG19644	Sorghum	plastid	63.21	57.79
OQU91730	Sorghum	cytosol	53.98	55.56
KRH18473	Soybean	plastid	59.38	53.87
KRG93537	Soybean	plastid	58.95	53.62
Solyc02g088000.2.1	Tomato	nucleus, plastid	58.24	53.39
PGSC0003DMT400003356	Potato	cytosol	58.1	53.32
AT3G01180.1	Thale cress	plastid	59.38	52.78
VIT_14s0108g00940.t01	Wine grape	plastid	59.09	52.0
Bra039138.1-P	Field mustard	plastid	56.68	51.75
KRH15937	Soybean	plastid	9.09	49.23
CDY55806	Canola	plastid	37.36	47.56
Bra021487.1-P	Field mustard	cytosol	22.87	43.4
KXG19354	Sorghum	plastid	36.36	39.57
CDY34693	Canola	endoplasmic reticulum, golgi	21.45	37.94
EER87785	Sorghum	plastid	29.55	34.21
EER98410	Sorghum	plastid	28.41	32.95
OQU78343	Sorghum	plastid	24.72	19.14
KXG31317	Sorghum	plastid	14.91	15.04
KXG27148	Sorghum	mitochondrion, plastid	24.72	14.61
KXG24650	Sorghum	plastid	24.86	10.39

Protein Annotations

KEGG:00500+2.4.1.21	MapMan:3.2.2.4.2	Gene3D:3.40.50.2000	EntrezGene:8066439	UniProt:C5XYT7	EnsemblPlants:EES05532
ProteinID:EES05532	ProteinID:EES05532.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0004373	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005975	GO:GO:0008150	GO:GO:0008152
GO:GO:0009011	GO:GO:0009058	GO:GO:0009501	GO:GO:0009507	GO:GO:0009536	GO:GO:0009987
GO:GO:0016740	GO:GO:0016757	GO:GO:0019252	InterPro:GS/SS	InterPro:Glyco_trans_1	HAMAP:MF_00484
PFAM:PF00534	PFAM:PF08323	PANTHER:PTHR12526	PANTHER:PTHR12526:SF371	MetaCyc:PWY-622	EnsemblPlantsGene:SORBI_3004G238600
SUPFAM:SSF53756	unigene:Sbi.20101	InterPro:Starch_synth_cat_dom	TIGRFAMs:TIGR02095	UniParc:UPI0001A854B3	RefSeq:XP_002452556.1
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr4:+:58642328..58646857

Molecular Weight (calculated)

76259.1 Da

IEP (calculated)

6.474

GRAVY (calculated)

-0.230

Length

704 amino acids

Sequence
(BLAST)

001: MSAAISSSSS AFLLLIASSS PRRRRGRVGA ALRSYGYSGA ELRLHWARRA PSRDAAAVVV RAAAAPAGGE EGEEAAAAGM SSSSKGVAVQ GSKAKAVDST
101: SPPKPVTSAT KQSPSAANQN GTVGSSSASK SATPVSELKA ETSAPVTKTE TDASAKVEEP KPAVDDAKPV ESIGVAEPVD AKVDVAAATD VEASAADDSE
201: DKKPGPLAGP NVMNVVVVAS ECAPFCKTGG LGDVVGALPK ALARRGHRVM VVIPRYGEYA EARDLGVRKR YRVAGQDSEV TYFHSYIDGV DFVFIEAPPF
301: RHRHNNIYGG ERLDILKRMI LFCKAAVEVP WYAPCGGTVY GDGNLVFIAN DWHTALLPVY LKAYYRDNGL MQYARSVLVI HNIAHQGRGP VDDFVNFDLP
401: EHYIDHFKLY DNIGGDHSNV FAAGLKAADR VVTVSNGYLW ELKTSEGGWG LHDIINQNDW KLQGIVNGID MSEWNPAVDV HLHSDGYTNY TFETLDTGKR
501: QCKAALQRQL GLQVRDDVPL IGFIGRLDGQ KGVDLIGDAI HWIAGQDVQL VMLGTGRPDL EDMLRRCEAE HNDKVRAWVG FSVPLAHRIT AGADVLLMPS
601: RFEPCGLNQL YAMAYGTVPV VHAVGGLRDT VAPFDPFNDT GLGWTFDRAE ANRMIDALHH CLNTYRNFKE SWRGLQERGM AQDLSWDHAA VLYEDVLVKA
701: KYQW

Best Arabidopsis Sequence Match ( AT3G01180.1 )
(BLAST)

001: MASVAESSFP LLCQIKTQRR INSSTLRHSR VSYHDLPSGS LSFRSRSFVL GHRCKCVSRV EASGSDDDEP EDALQATIDK SKKVLAMQRN LLHQIAERRK
101: LVSSIKESTP DLDDAKASSK QESASSVNAN TDATKKEIMD GDANGSVSPS TYGKSSLSKE PEAKTFSPST ESLKNRKQSS ASVISSSPVT SPQKPSDVAT
201: NGKPWSSVVA SSVDPPYKPS SVMTSPEKTS DPVTSPGKPS KSRAGAFWSD PLPSYLTKAP QTSTMKTEKY VEKTPDVASS ETNEPGKDEE KPPPLAGANV
301: MNVILVAAEC APFSKTGGLG DVAGALPKSL ARRGHRVMVV VPRYAEYAEA KDLGVRKRYK VAGQDMEVMY FHAFIDGVDF VFIDSPEFRH LSNNIYGGNR
401: LDILKRMVLF CKAAVEVPWY VPCGGVCYGD GNLAFIANDW HTALLPVYLK AYYRDHGIMK YTRSVLVIHN IAHQGRGPVD DFSYVDLPSH YLDSFKLYDP
501: VGGEHFNIFA AGLKAADRVL TVSHGYSWEV KTLEGGWGLH NIINENDWKF RGIVNGIDTQ EWNPEFDTYL HSDDYTNYSL ENLHIGKPQC KAALQKELGL
601: PVRPDVPLIG FIGRLDHQKG VDLIAEAVPW MMSQDVQLVM LGTGRPDLEE VLRQMEHQYR DKARGWVGFS VKTAHRITAG ADILLMPSRF EPCGLNQLYA
701: MNYGTIPVVH AVGGLRDTVQ QFDPYSETGL GWTFDSAEAG KLIHALGNCL LTYREYKESW EGLQRRGMTQ DLSWDNAAEK YEEVLVAAKY HW

Arabidopsis Description

SS2Starch synthase, chloroplastic/amyloplastic (Fragment) [Source:UniProtKB/TrEMBL;Acc:W8QNS2]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.