CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 11

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d019479_P004	Maize	plastid	93.74	90.89
HORVU2Hr1G090980.3	Barley	plastid	85.17	87.18
TraesCS2D01G369800.1	Wheat	plastid	86.0	87.15
TraesCS2B01G390700.1	Wheat	plastid	85.5	86.64
TraesCS2A01G373600.1	Wheat	plastid	85.34	86.48
Os07t0412100-01	Rice	plastid	85.34	85.2
Zm00001d029360_P001	Maize	cytosol	31.14	75.6
Zm00001d033690_P001	Maize	cytosol, plastid	39.54	70.59
VIT_15s0048g02600.t01	Wine grape	plastid	68.7	67.92
PGSC0003DMT400031568	Potato	plastid	67.22	67.22
Solyc08g083320.2.1	Tomato	plastid	66.56	67.11
KRH06370	Soybean	nucleus, plastid	68.04	66.72
KRH47803	Soybean	nucleus	67.38	66.07
KRG92546	Soybean	plastid	65.24	65.45
VIT_02s0025g02790.t01	Wine grape	plastid	65.07	65.29
KRH34245	Soybean	plastid	64.58	64.47
AT1G32900.1	Thale cress	plastid	64.25	63.93
EER87785	Sorghum	plastid	61.45	61.35
CDY71840	Canola	plastid	29.49	59.27
Bra010189.1-P	Field mustard	nucleus	64.58	53.55
CDX73274	Canola	plastid	31.96	50.79
OQU91730	Sorghum	cytosol	32.95	29.24
KXG19354	Sorghum	plastid	30.64	28.75
EES05532	Sorghum	plastid	32.95	28.41
KXG19644	Sorghum	plastid	33.94	26.75
OQU78343	Sorghum	plastid	26.03	17.38
KXG31317	Sorghum	plastid	14.66	12.75
KXG27148	Sorghum	mitochondrion, plastid	24.38	12.43
KXG24650	Sorghum	plastid	24.22	8.73

Protein Annotations

KEGG:00500+2.4.1.21	MapMan:3.2.2.4.5	Gene3D:3.40.50.2000	EntrezGene:8057926	UniProt:A4ZVI4	EnsemblPlants:EER98410
ProteinID:EER98410	ProteinID:EER98410.1	EMBL:EF472254	GO:GO:0003674	GO:GO:0003824	GO:GO:0004373
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005975	GO:GO:0008150
GO:GO:0008152	GO:GO:0009011	GO:GO:0009058	GO:GO:0009501	GO:GO:0009507	GO:GO:0009536
GO:GO:0009569	GO:GO:0009987	GO:GO:0016740	GO:GO:0016757	GO:GO:0019252	InterPro:GS/SS
InterPro:Glyco_trans_1	HAMAP:MF_00484	PFAM:PF00534	PFAM:PF08323	PANTHER:PTHR12526	PANTHER:PTHR12526:SF383
MetaCyc:PWY-622	EnsemblPlantsGene:SORBI_3002G116000	SUPFAM:SSF53756	unigene:Sbi.9911	InterPro:Starch_synth_cat_dom	TIGRFAMs:TIGR02095
UniParc:UPI0001503244	RefSeq:XP_002461889.1	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr2:-:14334143..14341029

Molecular Weight (calculated)

66510.2 Da

IEP (calculated)

6.669

GRAVY (calculated)

-0.080

Length

607 amino acids

Sequence
(BLAST)

001: MAAMMGSISA YGSYQTNRPS ALKQAPHMQF QQCCSSGVGF LSKHSQSMRS KTQLAKRRAT NNGIHPKTTR PRAPIVCSTG MAIIFVATEV HPWCKTGGLG
101: DVVGGLPPAL AAMGHRVMTI APRYDQYKDA WDTSVLVEVN IGDTVETVRF FHCYKRGVDR VFVDHPMFLE KVWGKTGAKL YGPTTGTDYR DNQLRFCLLC
201: LAALEAPRVL NLNSEHFSGP YGEDVVFVAN DWHTAVLPCY LKSMYKPNGI YANAKVAFCI HNIAYQGRFA RADFELLNLP DSFLPSFDFI DGYVKPVVGR
301: KINWMKAGII ESDLVLTVSP HYVKELTSGP EKGVELDGVL RTKPLETGIV NGMDVYEWDP ATDKHISVKY DATTAPEARP LNKERLQAEV GLPVDSSIPV
401: IIFVGRLEEQ KGSDILIAAI PEFVGENVQI IVLGTGKKKM EEELTQLEVK YPNNARGIAK FNVPLAHMMF AGADFIIVPS RFEPCGLIQL QGMRYGVIPI
501: CSSTGGLVDT VKEGVTGFHM GSFSVECETV DPADVTAVAS TVTRALKQYD TSAFHEMVQN CMAQDLSWKG PAKKWEEVLL GLGVEGSQAG IDGEEIAPLA
601: KENVATP

Best Arabidopsis Sequence Match ( AT1G32900.1 )
(BLAST)

001: MATVTASSNF VSRTSLFNNH GASSCSDVAQ ITLKGQSLTH CGLRSFNMVD NLQRRSQAKP VSAKSSKRSS KVKTAGKIVC EKGMSVIFIG AEVGPWSKTG
101: GLGDVLGGLP PALAARGHRV MTICPRYDQY KDAWDTCVVV QIKVGDKVEN VRFFHCYKRG VDRVFVDHPI FLAKVVGKTG SKIYGPITGV DYNDNQLRFS
201: LLCQAALEAP QVLNLNSSKY FSGPYGEDVV FVANDWHTAL LPCYLKSMYQ SRGVYMNAKV VFCIHNIAYQ GRFAFDDYSL LNLPISFKSS FDFMDGYEKP
301: VKGRKINWMK AAILEAHRVL TVSPYYAQEL ISGVDRGVEL HKYLRMKTVS GIINGMDVQE WNPSTDKYID IKYDITTVTD AKPLIKEALQ AAVGLPVDRD
401: VPVIGFIGRL EEQKGSDILV EAISKFMGLN VQMVILGTGK KKMEAQILEL EEKFPGKAVG VAKFNVPLAH MITAGADFII VPSRFEPCGL IQLHAMRYGT
501: VPIVASTGGL VDTVKDGYTG FHIGRFNVKC EVVDPDDVIA TAKAVTRAVA VYGTSAMQEM VKNCMDQDFS WKGPARLWEK VLLSLNVAGS EAGTEGEEIA
601: PLAKENVATP

Arabidopsis Description

GBSS1Granule-bound starch synthase 1, chloroplastic/amyloplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9MAQ0]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.