Factsheet for Bra010189.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 2
plastid 2
nucleus 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY71840	Canola	plastid	41.12	99.67
CDX73274	Canola	plastid	50.27	96.34
AT1G32900.1	Thale cress	plastid	76.78	92.13
VIT_02s0025g02790.t01	Wine grape	plastid	59.84	72.4
KRG92546	Soybean	plastid	59.02	71.41
KRH34245	Soybean	plastid	58.88	70.89
GSMUA_Achr1P06140_001	Banana	plastid	55.6	66.07
Os07t0412100-01	Rice	plastid	54.23	65.3
GSMUA_Achr1P08190_001	Banana	cytosol, plastid	54.78	65.1
HORVU2Hr1G090980.3	Barley	plastid	52.6	64.92
EER98410	Sorghum	plastid	53.55	64.58
GSMUA_Achr9P20780_001	Banana	plastid	53.96	64.33
TraesCS2D01G369800.1	Wheat	plastid	52.46	64.11
TraesCS2B01G390700.1	Wheat	plastid	52.32	63.94
TraesCS2A01G373600.1	Wheat	plastid	52.19	63.77
Zm00001d045462_P001	Maize	plastid	53.01	63.71
Zm00001d033937_P002	Maize	plastid	53.01	63.71
HORVU7Hr1G012380.5	Barley	plastid	51.78	62.85
EER87785	Sorghum	plastid	52.19	62.83
Zm00001d019479_P004	Maize	plastid	53.69	62.78
Os06t0133000-02	Rice	plastid	52.05	62.56
GSMUA_Achr1P16610_001	Banana	plastid	25.96	62.3
TraesCS4A01G418200.1	Wheat	plastid	51.37	62.15
TraesCS7D01G064300.1	Wheat	plastid	51.23	62.09
TraesCS7A01G070100.1	Wheat	plastid	50.68	61.42
Zm00001d029360_P001	Maize	cytosol	19.13	56.0
Zm00001d033690_P001	Maize	cytosol, plastid	25.96	55.88
GSMUA_Achr1P16620_001	Banana	cytosol	16.26	53.12
Zm00001d027242_P002	Maize	plastid	35.52	44.37
Bra021486.1-P	Field mustard	endoplasmic reticulum	9.56	33.18
Bra009747.1-P	Field mustard	plastid	28.42	31.95
Bra039138.1-P	Field mustard	plastid	30.46	28.92
Bra021487.1-P	Field mustard	cytosol	11.48	22.64
Bra019836.1-P	Field mustard	endoplasmic reticulum, vacuole	14.62	21.36
Bra021017.1-P	Field mustard	plastid	22.95	16.47
Bra024412.1-P	Field mustard	plastid	10.93	13.49
Bra016818.1-P	Field mustard	cytosol	21.72	12.11

Protein Annotations

KEGG:00500+2.4.1.21	MapMan:3.2.2.4.5	Gene3D:3.40.50.2000	ProteinID:AAO26329	ProteinID:AAO26329.1	EMBL:AY184479
EnsemblPlantsGene:Bra010189	EnsemblPlants:Bra010189.1	EnsemblPlants:Bra010189.1-P	GO:GO:0003674	GO:GO:0003824	GO:GO:0004373
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005975	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009501	GO:GO:0009507	GO:GO:0009536	GO:GO:0009569
GO:GO:0009987	GO:GO:0016740	GO:GO:0016757	GO:GO:0019252	InterPro:GS/SS	InterPro:Glyco_trans_1
UniProt:M4D140	HAMAP:MF_00484	PFAM:PF00534	PFAM:PF08323	PANTHER:PTHR12526	PANTHER:PTHR12526:SF383
SUPFAM:SSF53756	InterPro:Starch_synth_cat_dom	TIGRFAMs:TIGR02095	UniParc:UPI000253F841	SEG:seg	:

Description

AT1G32900 (E=1e-299) | starch synthase, putative

Coordinates

chrA06:-:20728790..20732210

Molecular Weight (calculated)

80775.8 Da

IEP (calculated)

9.511

GRAVY (calculated)

-0.139

Length

732 amino acids

Sequence
(BLAST)

001: MTKKYRPSIK QMGQEEMSSK DTFKVHDDKQ NTSITTGPTN WAMFRGKSQP WILSKWKKRT HENANSTTVI TPRVKFGQSS FHSPLYINGP PSSSFSPHLS
101: RCLITSSSVK RVSLSRKMAY VTASHFVSLV NNNHGGASGS EANANLSQIS FKCQSMTHCG LRSFNMVDRL QRRCQAKAVS AKSSKGLQQN APKAKRVGKI
201: VCEKGMSMIF IGAEVGPWSK TGGLGDVLGG LPPALAARGH RVMTVCPRYD QYKDAWDTCV VVQIKVGDKV EDVRFFHCYK RGVDRVFVDH PLFLAKVVGK
301: TGSKIYGPIT GVDYTDNQLR FSLLCQAALE APRVLNLNSS KYFSGPYGED VVFVANDWHT ALLPCYLKSV YQSRGIYMNA KVVFCIHNIA YQGRFAFDDF
401: SLLNLPDSFK SSFDFMDGYE KPVKGRKINW MKAAILEAWR VLTVSPYYAQ ELISGIDRGV ELHSYLRMKT VSGIINGMDV QEWNPATDKY IDIKYDITTV
501: TEAKPLIKEA LQAAVGLPVD RDVPVIGFIG RLEEQKGSDI LVEAISKFMG LNVQMVILGT GKKKMEAQIL ELEEKFPGKA VGVAKFNVPL AHMITAGADF
601: IIVPSRFEPC GLIQLHAMRY GTVPIVASTG GLVDTVKDGF TGFHIGRFNV KCEVVDPDDV IATAKAVARA VAVYGTPAMK EMVKNCMDQD FSWKGPARLW
701: EKVLLSLDVA GSEAGVEGEE IAPLAKENVA TP

Best Arabidopsis Sequence Match ( AT1G32900.1 )
(BLAST)

001: MATVTASSNF VSRTSLFNNH GASSCSDVAQ ITLKGQSLTH CGLRSFNMVD NLQRRSQAKP VSAKSSKRSS KVKTAGKIVC EKGMSVIFIG AEVGPWSKTG
101: GLGDVLGGLP PALAARGHRV MTICPRYDQY KDAWDTCVVV QIKVGDKVEN VRFFHCYKRG VDRVFVDHPI FLAKVVGKTG SKIYGPITGV DYNDNQLRFS
201: LLCQAALEAP QVLNLNSSKY FSGPYGEDVV FVANDWHTAL LPCYLKSMYQ SRGVYMNAKV VFCIHNIAYQ GRFAFDDYSL LNLPISFKSS FDFMDGYEKP
301: VKGRKINWMK AAILEAHRVL TVSPYYAQEL ISGVDRGVEL HKYLRMKTVS GIINGMDVQE WNPSTDKYID IKYDITTVTD AKPLIKEALQ AAVGLPVDRD
401: VPVIGFIGRL EEQKGSDILV EAISKFMGLN VQMVILGTGK KKMEAQILEL EEKFPGKAVG VAKFNVPLAH MITAGADFII VPSRFEPCGL IQLHAMRYGT
501: VPIVASTGGL VDTVKDGYTG FHIGRFNVKC EVVDPDDVIA TAKAVTRAVA VYGTSAMQEM VKNCMDQDFS WKGPARLWEK VLLSLNVAGS EAGTEGEEIA
601: PLAKENVATP

Arabidopsis Description

GBSS1Granule-bound starch synthase 1, chloroplastic/amyloplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9MAQ0]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.