Factsheet for Os07t0412100-01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

cytosol 2
plastid 5
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU2Hr1G090980.3	Barley	plastid	83.88	86.0
TraesCS2B01G390700.1	Wheat	plastid	84.21	85.48
EER98410	Sorghum	plastid	85.2	85.34
TraesCS2D01G369800.1	Wheat	plastid	84.05	85.31
TraesCS2A01G373600.1	Wheat	plastid	83.55	84.81
Zm00001d019479_P004	Maize	plastid	85.36	82.91
Zm00001d029360_P001	Maize	cytosol	30.43	74.0
KRH06370	Soybean	nucleus, plastid	69.08	67.85
KRH47803	Soybean	nucleus	68.91	67.69
VIT_15s0048g02600.t01	Wine grape	plastid	67.93	67.26
Solyc08g083320.2.1	Tomato	plastid	66.12	66.78
PGSC0003DMT400031568	Potato	plastid	66.28	66.39
VIT_02s0025g02790.t01	Wine grape	plastid	65.79	66.12
KRG92546	Soybean	plastid	65.46	65.79
Zm00001d033690_P001	Maize	cytosol, plastid	36.51	65.29
KRH34245	Soybean	plastid	64.8	64.8
AT1G32900.1	Thale cress	plastid	64.31	64.1
Os06t0133000-02	Rice	plastid	62.5	62.4
CDY71840	Canola	plastid	29.61	59.6
Bra010189.1-P	Field mustard	nucleus	65.3	54.23
Zm00001d027242_P002	Maize	plastid	50.66	52.56
CDX73274	Canola	plastid	32.24	51.31
Os02t0744700-01	Rice	nucleus	33.06	29.69
Os06t0160700-01	Rice	plastid	29.93	28.39
Os10t0437600-00	Rice	plastid	33.06	26.84
Os06t0229800-01	Rice	plastid	33.55	25.19
Os05t0533600-02	Rice	plastid	26.15	17.3
Os01t0720600-01	Rice	plastid	26.97	16.82
Os04t0624600-01	Rice	plastid	23.52	11.76
Os08t0191433-01	Rice	plastid	23.19	9.08
Os02t0807100-01	Rice	plastid	3.78	7.42

Protein Annotations

KEGG:00500+2.4.1.21	MapMan:3.2.2.4.5	Gene3D:3.40.50.2000	EntrezGene:4343010	ProteinID:ACY56077.1	ProteinID:BAC21549.1
ProteinID:BAF21364.1	ProteinID:BAT01130.1	ProteinID:EEE67017.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0004373
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005975	GO:GO:0008150
GO:GO:0008152	GO:GO:0009011	GO:GO:0009058	GO:GO:0009501	GO:GO:0009507	GO:GO:0009536
GO:GO:0009569	GO:GO:0009987	GO:GO:0016740	GO:GO:0016757	GO:GO:0019252	InterPro:GS/SS
InterPro:Glyco_trans_1	HAMAP:MF_00484	EnsemblPlantsGene:Os07g0412100	EnsemblPlants:Os07t0412100-01	PFAM:PF00534	PFAM:PF08323
PANTHER:PTHR12526	PANTHER:PTHR12526:SF383	UniProt:Q8GTK0	SUPFAM:SSF53756	InterPro:Starch_synth_cat_dom	TIGRFAMs:TIGR02095
UniParc:UPI00000AE332	RefSeq:XP_015647210.1	SEG:seg	:	:	:

Description

GRANULE BOUND STARCH SYNTHASE IISimilar to Granule-bound starch synthase Ib, chloroplast precursor (EC 2.4.1.21) (Fragment). (Os07t0412100-01);Granule-bound starch synthase 2, Starch biosynthesis (Os07t0412100-02)

Coordinates

chr7:-:12916883..12924202

Molecular Weight (calculated)

67358.6 Da

IEP (calculated)

6.689

GRAVY (calculated)

-0.076

Length

608 amino acids

Sequence
(BLAST)

001: MARTMGSTPT YCSYQTNGVG ALKQSPHMQF QQSYNYGVRF LKRDTLSVRI NKHMAKRIAT STGICTKPRR SHMPIVCSAG MTIIFIATEC HPWCKTGGLG
101: DVLGGLPPAL AAMGHRVMTI VPRYDQYKDA WDTNVLVEVN IGDRTETVRF FHCYKRGVDR VFVDHPMFLE KVWGKTGPKL YGPTTGDDYR DNQLRFCLLC
201: LAALEAPRVL NLNNSEYFSG PYGENVVFVA NDWHTGVLPC YLKSIYQAKG MYVNAKVAFC IHNIAYQGRF AREDFELLNL PDSFLPSFDF IDGHFKPVVG
301: RKINWMKAGI TECDLVMTVS PHYVKELASG PDKGVELDGI LRTKPLETGI VNGMDVYEWN PATDQYISVK YDATTVTEAR ALNKEMLQAE VGLPVDSSIP
401: LIVFVGRLEE QKGSDILIAA IPEFVEGNVQ IIVLGTGKKK MEEELILLEV KYPNNARGIA KFNVPLAHMM FAGADFIIVP SRFEPCGLIQ LQGMRYGVVP
501: ICSSTGGLVD TVKEGVTGFH MGLFNVECET VDPVDVTAVA STVKRALKQY NTPAFQEMVQ NCMAQDLSWK GPAKKWEEVL LGLGVEGSQP GIEGEELAPL
601: AKENVATP

Best Arabidopsis Sequence Match ( AT1G32900.1 )
(BLAST)

001: MATVTASSNF VSRTSLFNNH GASSCSDVAQ ITLKGQSLTH CGLRSFNMVD NLQRRSQAKP VSAKSSKRSS KVKTAGKIVC EKGMSVIFIG AEVGPWSKTG
101: GLGDVLGGLP PALAARGHRV MTICPRYDQY KDAWDTCVVV QIKVGDKVEN VRFFHCYKRG VDRVFVDHPI FLAKVVGKTG SKIYGPITGV DYNDNQLRFS
201: LLCQAALEAP QVLNLNSSKY FSGPYGEDVV FVANDWHTAL LPCYLKSMYQ SRGVYMNAKV VFCIHNIAYQ GRFAFDDYSL LNLPISFKSS FDFMDGYEKP
301: VKGRKINWMK AAILEAHRVL TVSPYYAQEL ISGVDRGVEL HKYLRMKTVS GIINGMDVQE WNPSTDKYID IKYDITTVTD AKPLIKEALQ AAVGLPVDRD
401: VPVIGFIGRL EEQKGSDILV EAISKFMGLN VQMVILGTGK KKMEAQILEL EEKFPGKAVG VAKFNVPLAH MITAGADFII VPSRFEPCGL IQLHAMRYGT
501: VPIVASTGGL VDTVKDGYTG FHIGRFNVKC EVVDPDDVIA TAKAVTRAVA VYGTSAMQEM VKNCMDQDFS WKGPARLWEK VLLSLNVAGS EAGTEGEEIA
601: PLAKENVATP

Arabidopsis Description

GBSS1Granule-bound starch synthase 1, chloroplastic/amyloplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9MAQ0]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.