Factsheet for Os06t0229800-01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9
cytosol 1

Predictors

GFP

MS/MS

Papers

plastid: 27992503

msms PMID: 27992503 doi

S Xing, X Meng, L Zhou, H Mujahid, C Zhao, Y Zhang, C Wang, Z Peng

Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, Mississippi, United States of America., Institute of Food Crops, Jiangsu Academy of Agricultural Sciences, Jiangsu High Quality Rice Research and Development Center, Nanjing Branch of China National Center for Rice Improvement, Nanjing, Jiangsu, China.

PPI

Inferred distinct locusB in Crop

locusB	locations
Os02t0747400-01
Os06t0226700-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G01180.1	Os02t0747400-01	AT3G47620.1	21798944
AT3G01180.1	Os06t0226700-01	AT3G47620.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH01182	Soybean	cytosol	24.81	75.56
CDY34695	Canola	plastid	12.96	73.43
KXG19644	Sorghum	plastid	65.93	69.35
Zm00001d037234_P005	Maize	plastid	64.32	69.01
Bra021486.1-P	Field mustard	endoplasmic reticulum	17.65	67.77
TraesCS7A01G189000.1	Wheat	plastid	65.93	67.09
TraesCS7D01G190100.1	Wheat	plastid	65.31	66.21
TraesCS7B01G093800.2	Wheat	plastid	64.69	65.66
Os02t0744700-01	Rice	nucleus	53.95	64.55
HORVU7Hr1G038420.1	Barley	plastid	64.94	61.45
CDY43274	Canola	plastid	51.48	59.74
CDY37538	Canola	plastid	49.01	58.64
KRH18473	Soybean	plastid	51.6	53.87
KRG93537	Soybean	plastid	51.36	53.75
PGSC0003DMT400003356	Potato	cytosol	50.62	53.45
Solyc02g088000.2.1	Tomato	nucleus, plastid	50.62	53.39
AT3G01180.1	Thale cress	plastid	51.36	52.53
Bra039138.1-P	Field mustard	plastid	49.88	52.4
VIT_14s0108g00940.t01	Wine grape	plastid	51.23	51.88
Os10t0437600-00	Rice	plastid	46.91	50.73
KRH15937	Soybean	plastid	7.9	49.23
CDY55806	Canola	plastid	32.59	47.74
Bra021487.1-P	Field mustard	cytosol	19.38	42.32
Os06t0160700-01	Rice	plastid	31.85	40.25
CDY34693	Canola	endoplasmic reticulum, golgi	18.15	36.93
Os06t0133000-02	Rice	plastid	25.68	34.15
Os07t0412100-01	Rice	plastid	25.19	33.55
Os05t0533600-02	Rice	plastid	21.6	19.04
Os01t0720600-01	Rice	plastid	21.48	17.85
Os04t0624600-01	Rice	plastid	20.86	13.9
Os02t0807100-01	Rice	plastid	3.83	10.0
Os08t0191433-01	Rice	plastid	18.77	9.79

Protein Annotations

KEGG:00500+2.4.1.21	MapMan:3.2.2.4.2	Gene3D:3.40.50.2000	EntrezGene:4340567	EMBL:AB115915	EMBL:AB115916
ProteinID:ACY56202.1	EMBL:AF419099	EMBL:AK101978	UniProt:B7ESH5	ProteinID:BAD37272.1	ProteinID:BAF19130.1
ProteinID:BAS96901.1	ncoils:Coil	GO:GO:0003674	GO:GO:0003824	GO:GO:0004373	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005975	GO:GO:0008150	GO:GO:0008152
GO:GO:0009011	GO:GO:0009058	GO:GO:0009501	GO:GO:0009507	GO:GO:0009536	GO:GO:0009987
GO:GO:0016740	GO:GO:0016757	GO:GO:0019252	GO:GO:0033201	InterPro:GS/SS	HAMAP:MF_00484
EnsemblPlantsGene:Os06g0229800	EnsemblPlants:Os06t0229800-01	PFAM:PF08323	PFAM:PF13692	PANTHER:PTHR12526	PANTHER:PTHR12526:SF371
UniProt:Q0DDE3	SUPFAM:SSF53756	InterPro:Starch_synth_cat_dom	TIGRFAMs:TIGR02095	UniParc:UPI00000A5491	RefSeq:XP_015644246.1
SEG:seg	:	:	:	:	:

Description

ALKALI DEGENERATIONSoluble starch synthase II-3, Endosperm starch synthesis, Determination of the type of amylopectin structure of starch grain (Os06t0229800-01)

Coordinates

chr6:+:6748398..6753302

Molecular Weight (calculated)

88380.1 Da

IEP (calculated)

5.138

GRAVY (calculated)

-0.414

Length

810 amino acids

Sequence
(BLAST)

001: MSSAVVASST TFLVALASSA SRGGPRRGRV VGVAAPPALL YDGRAGRLAL RAPPPPRPRP RRRDAGVVRR ADDGENEAAV ERAGEDDDEE EEFSSGAWQP
101: PRSRRGGVGK VLKRRGTVPP VGRYGSGGDA ARVRGAAAPA PAPTQDAASS KNGALLSGRD DDTPASRNGS VVTGADKPAA ATPPVTITKL PAPDSPVILP
201: SVDKPQPEFV IPDATAPAPP PPGSNPRSSA PLPKPDNSEF AEDKSAKVVE SAPKPKATRS SPIPAVEEET WDFKKYFDLN EPDAAEDGDD DDDWADSDAS
301: DSEIDQDDDS GPLAGENVMN VIVVAAECSP WCKTGGLGDV AGALPKALAR RGHRVMVVVP RYGDYAEAQD VGIRKYYKAA GQDLEVKYFH AFIDGVDFVF
401: IDAPLFRHRQ DDIYGGNRQE IMKRMILFCK AAVEVPWHVP CGGVPYGDGN LVFLANDWHT ALLPVYLKAY YRDNGMMQYT RSVLVIHNIA YQGRGPVDEF
501: PYMELPEHYL DHFKLYDPVG GEHANIFGAG LKMADRVVTV SPGYLWELKT TEGGWGLHDI IRENDWKMNG IVNGIDYREW NPEVDVHLQS DGYANYTVAS
601: LDSSKPRCKA ALQRELGLEV RDDVPLIGFI GRLDGQKGVD IIGDAMPWIA GQDVQLVLLG SGRRDLEVML QRFEAQHNSK VRGWVGFSVK MAHRITAGAD
701: VLVMPSRFEP CGLNQLYAMA YGTVPVVHAV GGLRDTMSAF DPFEDTGLGW TFDRAEPHKL IEALGHCLET YRKYKESWRG LQVRGMSQDL SWDHAAELYE
801: EVLVKAKYQW

Best Arabidopsis Sequence Match ( AT3G01180.1 )
(BLAST)

001: MASVAESSFP LLCQIKTQRR INSSTLRHSR VSYHDLPSGS LSFRSRSFVL GHRCKCVSRV EASGSDDDEP EDALQATIDK SKKVLAMQRN LLHQIAERRK
101: LVSSIKESTP DLDDAKASSK QESASSVNAN TDATKKEIMD GDANGSVSPS TYGKSSLSKE PEAKTFSPST ESLKNRKQSS ASVISSSPVT SPQKPSDVAT
201: NGKPWSSVVA SSVDPPYKPS SVMTSPEKTS DPVTSPGKPS KSRAGAFWSD PLPSYLTKAP QTSTMKTEKY VEKTPDVASS ETNEPGKDEE KPPPLAGANV
301: MNVILVAAEC APFSKTGGLG DVAGALPKSL ARRGHRVMVV VPRYAEYAEA KDLGVRKRYK VAGQDMEVMY FHAFIDGVDF VFIDSPEFRH LSNNIYGGNR
401: LDILKRMVLF CKAAVEVPWY VPCGGVCYGD GNLAFIANDW HTALLPVYLK AYYRDHGIMK YTRSVLVIHN IAHQGRGPVD DFSYVDLPSH YLDSFKLYDP
501: VGGEHFNIFA AGLKAADRVL TVSHGYSWEV KTLEGGWGLH NIINENDWKF RGIVNGIDTQ EWNPEFDTYL HSDDYTNYSL ENLHIGKPQC KAALQKELGL
601: PVRPDVPLIG FIGRLDHQKG VDLIAEAVPW MMSQDVQLVM LGTGRPDLEE VLRQMEHQYR DKARGWVGFS VKTAHRITAG ADILLMPSRF EPCGLNQLYA
701: MNYGTIPVVH AVGGLRDTVQ QFDPYSETGL GWTFDSAEAG KLIHALGNCL LTYREYKESW EGLQRRGMTQ DLSWDNAAEK YEEVLVAAKY HW

Arabidopsis Description

SS2Starch synthase, chloroplastic/amyloplastic (Fragment) [Source:UniProtKB/TrEMBL;Acc:W8QNS2]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.