Factsheet for Os02t0744700-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 4
mitochondrion 4

Predictors

GFP

MS/MS

Papers

nucleus: 24133045

msms PMID: 24133045 doi

DK Jaiswal, D Ray, MK Choudhary, P Subba, A Kumar, J Verma, R Kumar, A Datta, S Chakraborty, N Chakraborty

National Institute of Plant Genome Research, New Delhi, India.

PPI

Inferred distinct locusB in Crop

locusB	locations
Os02t0747400-01
Os06t0226700-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G01180.1	Os02t0747400-01	AT3G47620.1	21798944
AT3G01180.1	Os06t0226700-01	AT3G47620.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES05532	Sorghum	plastid	79.47	76.42
TraesCS6D01G287000.1	Wheat	plastid	74.59	76.17
Zm00001d018033_P001	Maize	plastid	77.4	76.16
HORVU6Hr1G075950.4	Barley	plastid	75.92	76.15
TraesCS6A01G307800.1	Wheat	plastid	75.63	75.74
Zm00001d052263_P001	Maize	plastid	78.29	75.71
TraesCS6B01G336400.1	Wheat	plastid	75.33	75.67
KRH01182	Soybean	cytosol	29.54	75.19
CDY34695	Canola	plastid	15.51	73.43
Bra021486.1-P	Field mustard	endoplasmic reticulum	21.27	68.25
CDY43274	Canola	plastid	60.56	58.74
CDY37538	Canola	plastid	58.05	58.05
Os06t0229800-01	Rice	plastid	64.55	53.95
Solyc02g088000.2.1	Tomato	nucleus, plastid	59.23	52.21
PGSC0003DMT400003356	Potato	cytosol	59.08	52.15
AT3G01180.1	Thale cress	plastid	61.0	52.15
KRG93537	Soybean	plastid	59.53	52.07
KRH18473	Soybean	plastid	59.67	52.06
VIT_14s0108g00940.t01	Wine grape	plastid	61.0	51.62
Bra039138.1-P	Field mustard	plastid	58.64	51.49
Os10t0437600-00	Rice	plastid	56.57	51.13
KRH15937	Soybean	plastid	9.31	48.46
CDY55806	Canola	plastid	37.67	46.11
Bra021487.1-P	Field mustard	cytosol	22.9	41.78
Os06t0160700-01	Rice	plastid	36.34	38.38
CDY34693	Canola	endoplasmic reticulum, golgi	21.27	36.18
Os07t0412100-01	Rice	plastid	29.69	33.06
Os06t0133000-02	Rice	plastid	29.69	33.0
Os05t0533600-02	Rice	plastid	24.96	18.39
Os01t0720600-01	Rice	plastid	23.78	16.51
Os04t0624600-01	Rice	plastid	25.7	14.31
Os08t0191433-01	Rice	plastid	24.08	10.5
Os02t0807100-01	Rice	plastid	4.43	9.68

Protein Annotations

KEGG:00500+2.4.1.21	MapMan:3.2.2.4.2	Gene3D:3.40.50.2000	ProteinID:BAF10018.1	ProteinID:BAS80891.1	GO:GO:0003674
GO:GO:0003824	GO:GO:0004373	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0009011	GO:GO:0009058	GO:GO:0009501
GO:GO:0009507	GO:GO:0009536	GO:GO:0009987	GO:GO:0016740	GO:GO:0016757	GO:GO:0019252
GO:GO:0033201	InterPro:GS/SS	InterPro:Glyco_trans_1	HAMAP:MF_00484	EnsemblPlantsGene:Os02g0744700	EnsemblPlants:Os02t0744700-01
PFAM:PF00534	PFAM:PF08323	PANTHER:PTHR12526	PANTHER:PTHR12526:SF371	UniProt:Q0DXM0	SUPFAM:SSF53756
InterPro:Starch_synth_cat_dom	TIGRFAMs:TIGR02095	UniParc:UPI0000DF086D	SEG:seg	:	:

Description

SOLUBLE STARCH SYNTHASE IIBSimilar to Starch synthase isoform zSTSII-2 (EC 2.4.1.21). (Os02t0744700-01);Similar to Soluble starch synthase 2-2, chloroplastic/amyloplastic. (Os02t0744700-02)

Coordinates

chr2:-:31233292..31238210

Molecular Weight (calculated)

74154.7 Da

IEP (calculated)

6.477

GRAVY (calculated)

-0.307

Length

677 amino acids

Sequence
(BLAST)

001: FTSSSPRRRR SRVSGVWWHL YGGTGLRLHW ERRGLVRDGA VVCSASAAGG EDGVAKAKTK SAGSSKAVAV QGSTAKADHV EDSVSSPKYV KPAVAKQNGE
101: VVSRATKSDA PVSKPKVDPS VPASKAEADG NAQAVESKAA LDKKEDVGVA EPLEAKADAG GDAGAVSSAD DSENKESGPL AGPNVMNVIV VASECSPFCK
201: TGGLGDVVGA LPKALARRGH RVMVVIPRYG EYAEAKDLGV RKRYRVAGQD SEVSYFHAFI DGVDFVFLEA PPFRHRHNDI YGGERFDVLK RMILFCKAAV
301: EVPWFAPCGG SIYGDGNLVF IANDWHTALL PVYLKAYYRD NGLMQYTRSV LVIHNIAHQG RGPVDDFATM DLPEHYIDHF RLYDPVGGEH SNVFAAGLKM
401: ADRAVTVSHG YLWEIKTMDG GWGLHEIINH NDWKLQGIVN GIDMAEWNPE VDEHLQSDGY ANYTFETLDT GKKQCKEALQ RQLGLQVRDD VPLIGFIGRL
501: DHQKGVDIIG DAMPWIAGQD VQVVMLGTGR PDLEEMLRRF ESEHNDKVRG WVGFSVQLAH RITAGADVLL MPSRFEPCGL NQLYAMAYGT VPVVHAVGGL
601: RDTVAPFDPF ADTGLGWTFD RAEANRMIDA LGHCLNTYRN YKESWRGLQA RGMAQDLSWD HAAELYEDVL VKAKYQW

Best Arabidopsis Sequence Match ( AT3G01180.1 )
(BLAST)

001: MASVAESSFP LLCQIKTQRR INSSTLRHSR VSYHDLPSGS LSFRSRSFVL GHRCKCVSRV EASGSDDDEP EDALQATIDK SKKVLAMQRN LLHQIAERRK
101: LVSSIKESTP DLDDAKASSK QESASSVNAN TDATKKEIMD GDANGSVSPS TYGKSSLSKE PEAKTFSPST ESLKNRKQSS ASVISSSPVT SPQKPSDVAT
201: NGKPWSSVVA SSVDPPYKPS SVMTSPEKTS DPVTSPGKPS KSRAGAFWSD PLPSYLTKAP QTSTMKTEKY VEKTPDVASS ETNEPGKDEE KPPPLAGANV
301: MNVILVAAEC APFSKTGGLG DVAGALPKSL ARRGHRVMVV VPRYAEYAEA KDLGVRKRYK VAGQDMEVMY FHAFIDGVDF VFIDSPEFRH LSNNIYGGNR
401: LDILKRMVLF CKAAVEVPWY VPCGGVCYGD GNLAFIANDW HTALLPVYLK AYYRDHGIMK YTRSVLVIHN IAHQGRGPVD DFSYVDLPSH YLDSFKLYDP
501: VGGEHFNIFA AGLKAADRVL TVSHGYSWEV KTLEGGWGLH NIINENDWKF RGIVNGIDTQ EWNPEFDTYL HSDDYTNYSL ENLHIGKPQC KAALQKELGL
601: PVRPDVPLIG FIGRLDHQKG VDLIAEAVPW MMSQDVQLVM LGTGRPDLEE VLRQMEHQYR DKARGWVGFS VKTAHRITAG ADILLMPSRF EPCGLNQLYA
701: MNYGTIPVVH AVGGLRDTVQ QFDPYSETGL GWTFDSAEAG KLIHALGNCL LTYREYKESW EGLQRRGMTQ DLSWDNAAEK YEEVLVAAKY HW

Arabidopsis Description

SS2Starch synthase, chloroplastic/amyloplastic (Fragment) [Source:UniProtKB/TrEMBL;Acc:W8QNS2]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.