CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid
BaCelLo:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH15937	Soybean	plastid	19.55	40.0
TraesCS6D01G287000.1	Wheat	plastid	77.82	31.22
HORVU6Hr1G075950.4	Barley	plastid	78.2	30.81
TraesCS6A01G307800.1	Wheat	plastid	78.2	30.77
TraesCS6B01G336400.1	Wheat	plastid	77.82	30.71
Zm00001d052263_P001	Maize	plastid	79.7	30.29
Zm00001d018033_P001	Maize	plastid	77.82	30.09
EES05532	Sorghum	plastid	79.32	29.97
OQU91730	Sorghum	cytosol	76.32	29.68
Os02t0744700-01	Rice	nucleus	75.19	29.54
KRH18473	Soybean	plastid	86.09	29.51
KRG93537	Soybean	plastid	85.71	29.46
Solyc02g088000.2.1	Tomato	nucleus, plastid	83.08	28.78
PGSC0003DMT400003356	Potato	cytosol	82.71	28.68
KRH16258	Soybean	extracellular	14.66	28.68
VIT_14s0108g00940.t01	Wine grape	plastid	86.09	28.62
TraesCS1B01G155700.3	Wheat	plastid	77.82	27.86
Zm00001d037234_P005	Maize	plastid	78.95	27.81
TraesCS1D01G138100.2	Wheat	plastid	78.2	27.7
Os10t0437600-00	Rice	plastid	77.44	27.5
TraesCS1A01G137200.1	Wheat	plastid	77.44	27.43
KXG19644	Sorghum	plastid	78.2	27.01
Zm00001d014150_P005	Maize	plastid	77.07	26.49
TraesCS7A01G189000.1	Wheat	plastid	77.07	25.75
TraesCS7B01G093800.2	Wheat	plastid	77.07	25.69
TraesCS7D01G190100.1	Wheat	plastid	77.07	25.66
HORVU1Hr1G035960.19	Barley	cytosol, plastid	77.44	25.65
Os06t0229800-01	Rice	plastid	75.56	24.81
HORVU7Hr1G038420.1	Barley	plastid	77.07	23.95
KRH53506	Soybean	plastid	52.63	22.08
KRH64431	Soybean	plastid	53.01	21.66
KRH47803	Soybean	nucleus	45.86	19.71
GSMUA_Achr1P24640_001	Banana	cytosol	14.66	19.7
KRH06370	Soybean	nucleus, plastid	45.11	19.39
KRG92546	Soybean	plastid	43.61	19.17
KRH34245	Soybean	plastid	43.61	19.08
KRH39530	Soybean	cytosol	15.79	15.27
KRH58438	Soybean	nucleus	31.95	8.59
KRH42312	Soybean	nucleus	30.83	8.28
KRH74428	Soybean	plastid	21.05	8.19
KRH51091	Soybean	plastid	28.95	7.12
KRH20852	Soybean	plastid	29.7	6.88
KRH11434	Soybean	plastid	30.08	6.86

Protein Annotations

KEGG:00500+2.4.1.21	Gene3D:3.40.50.2000	MapMan:35.1	UniProt:A0A0R0F4I7	EMBL:ACUP02011506	EnsemblPlantsGene:GLYMA_18G260100
GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0009011	GO:GO:0009058	GO:GO:0009507
GO:GO:0009536	GO:GO:0009987	GO:GO:0016740	GO:GO:0019252	InterPro:Glyco_trans_1	EnsemblPlants:KRH01182
ProteinID:KRH01182	ProteinID:KRH01182.1	PFAM:PF00534	PFAM:PF08323	PANTHER:PTHR12526	PANTHER:PTHR12526:SF337
MetaCyc:PWY-622	SUPFAM:SSF53756	InterPro:Starch_synth_cat_dom	UniParc:UPI0006EDE8E0	:	:

Description

hypothetical protein

Coordinates

chr18:+:54622265..54623793

Molecular Weight (calculated)

29584.4 Da

IEP (calculated)

6.504

GRAVY (calculated)

-0.086

Length

266 amino acids

Sequence
(BLAST)

001: MVPWHVPCGG VCYGDGNLAF IENDWHTALL PVYLKAYYRD QGLMQYARSV LVIHNIAHQG RGPVDDFFFV DLPEHHKDLF KFHIGGDHFN IFAAGLKTAD
101: RVVTVSHGYA WELKTSEGGW GLHGIINEND WKLGHYGYTN YSLETLSSGK AKCKAALQKE LGLPIHEDVP KGIDLIAKAI PWLMSQDVQL VRGWVGFSVK
201: MAHRITAGAD ILLMPSRFEP CGLNQLYAMN YGTVPVVHAV GGLRDTVQPF DPFNESGLGW TFDSAD

Best Arabidopsis Sequence Match ( AT3G01180.1 )
(BLAST)

001: MASVAESSFP LLCQIKTQRR INSSTLRHSR VSYHDLPSGS LSFRSRSFVL GHRCKCVSRV EASGSDDDEP EDALQATIDK SKKVLAMQRN LLHQIAERRK
101: LVSSIKESTP DLDDAKASSK QESASSVNAN TDATKKEIMD GDANGSVSPS TYGKSSLSKE PEAKTFSPST ESLKNRKQSS ASVISSSPVT SPQKPSDVAT
201: NGKPWSSVVA SSVDPPYKPS SVMTSPEKTS DPVTSPGKPS KSRAGAFWSD PLPSYLTKAP QTSTMKTEKY VEKTPDVASS ETNEPGKDEE KPPPLAGANV
301: MNVILVAAEC APFSKTGGLG DVAGALPKSL ARRGHRVMVV VPRYAEYAEA KDLGVRKRYK VAGQDMEVMY FHAFIDGVDF VFIDSPEFRH LSNNIYGGNR
401: LDILKRMVLF CKAAVEVPWY VPCGGVCYGD GNLAFIANDW HTALLPVYLK AYYRDHGIMK YTRSVLVIHN IAHQGRGPVD DFSYVDLPSH YLDSFKLYDP
501: VGGEHFNIFA AGLKAADRVL TVSHGYSWEV KTLEGGWGLH NIINENDWKF RGIVNGIDTQ EWNPEFDTYL HSDDYTNYSL ENLHIGKPQC KAALQKELGL
601: PVRPDVPLIG FIGRLDHQKG VDLIAEAVPW MMSQDVQLVM LGTGRPDLEE VLRQMEHQYR DKARGWVGFS VKTAHRITAG ADILLMPSRF EPCGLNQLYA
701: MNYGTIPVVH AVGGLRDTVQ QFDPYSETGL GWTFDSAEAG KLIHALGNCL LTYREYKESW EGLQRRGMTQ DLSWDNAAEK YEEVLVAAKY HW

Arabidopsis Description

SS2Starch synthase, chloroplastic/amyloplastic (Fragment) [Source:UniProtKB/TrEMBL;Acc:W8QNS2]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.