Factsheet for TraesCS1D01G138100.2

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS6A01G306500.1
TraesCS6B01G334900.1
TraesCS6D01G285600.1
TraesCS7B01G091900.1
TraesCS7D01G187600.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G01180.1	TraesCS6A01G306500.1	AT3G47620.1	21798944
AT3G01180.1	TraesCS6B01G334900.1	AT3G47620.1	21798944
AT3G01180.1	TraesCS6D01G285600.1	AT3G47620.1	21798944
AT3G01180.1	TraesCS7B01G091900.1	AT3G47620.1	21798944
AT3G01180.1	TraesCS7D01G187600.1	AT3G47620.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1B01G155700.3	Wheat	plastid	95.87	96.9
TraesCS1A01G137200.1	Wheat	plastid	96.4	96.4
HORVU1Hr1G035960.19	Barley	cytosol, plastid	94.14	88.04
KRH01182	Soybean	cytosol	27.7	78.2
CDY34695	Canola	plastid	13.98	73.43
Os10t0437600-00	Rice	plastid	72.57	72.76
OQU91730	Sorghum	cytosol	65.78	72.22
Zm00001d014150_P005	Maize	plastid	72.84	70.67
Bra021486.1-P	Field mustard	endoplasmic reticulum	18.77	66.82
CDY43274	Canola	plastid	55.79	60.03
CDY37538	Canola	plastid	53.66	59.53
TraesCS6D01G287000.1	Wheat	plastid	51.13	57.92
GSMUA_Achr6P23190_001	Banana	cytosol	55.13	56.87
KRH18473	Soybean	plastid	56.19	54.38
KRG93537	Soybean	plastid	55.26	53.62
VIT_14s0108g00940.t01	Wine grape	plastid	56.99	53.5
AT3G01180.1	Thale cress	plastid	56.19	53.28
PGSC0003DMT400003356	Potato	cytosol	54.33	53.19
Solyc02g088000.2.1	Tomato	nucleus, plastid	54.19	52.99
Bra039138.1-P	Field mustard	plastid	54.06	52.66
GSMUA_Achr1P24650_001	Banana	mitochondrion	54.33	51.78
CDY55806	Canola	plastid	35.42	48.1
KRH15937	Soybean	plastid	8.12	46.92
TraesCS7D01G190100.1	Wheat	plastid	49.53	46.56
Bra021487.1-P	Field mustard	cytosol	19.17	38.81
TraesCS7D01G117800.1	Wheat	plastid	33.69	38.63
TraesCS2D01G369800.1	Wheat	plastid	28.36	35.56
TraesCS7D01G064300.1	Wheat	plastid	28.5	35.43
CDY34693	Canola	endoplasmic reticulum, golgi	18.51	34.92
TraesCS1D01G356900.1	Wheat	plastid	22.9	18.84
TraesCS2D01G468900.2	Wheat	endoplasmic reticulum, golgi	23.57	12.62
TraesCS1D01G100100.1	Wheat	cytosol	21.7	10.11

Protein Annotations

EnsemblPlants:TraesCS1D01G138100.2	EnsemblPlantsGene:TraesCS1D01G138100	Gene3D:3.40.50.2000	GO:GO:0003674	GO:GO:0003824	GO:GO:0004373
GO:GO:0016740	HAMAP:MF_00484	InterPro:GS/SS	InterPro:Glyco_trans_1	InterPro:Starch_synth_cat_dom	KEGG:00500+2.4.1.21
PANTHER:PTHR12526	PANTHER:PTHR12526:SF542	PFAM:PF00534	PFAM:PF08323	SEG:seg	SUPFAM:SSF53756
TIGR:cd03791	TIGRFAMs:TIGR02095	MapMan:3.2.2.4.2	:	:	:

Description

No Description!

Coordinates

chr1D:+:189646049..189661484

Molecular Weight (calculated)

83396.8 Da

IEP (calculated)

6.816

GRAVY (calculated)

-0.372

Length

751 amino acids

Sequence
(BLAST)

001: MAATSSSFFA PPPAALLRHG ASPRPTAAAS PSSSWRCHGR LQRPSVRVPR RRPATPAAAR PLRFCGNGVY GWPAVPRGWT KRGPTKGLCA AGAHDDAVNQ
101: VGEGVDHDDN GVRVSNEALR ATIRKSREVL AMHRDLLDQI PEKKKLISII EASSIHNGQE PFSGSPFSRS DAVSEGEEIG YDLQMYLDRR SQKSEIRSTH
201: GESISGQHEY YGSLEGKLSN ADVNGSYSKD YEKGHSVTEE INDNSSSSAA VDVMNIILVA AECAPWSKTG GLGDVAGALP KALSKRGHRV MAIVPMYGNY
301: EEPHQIGEPK RYQVAGQDME VKYHHAYIDG VDFVFIDNPI FHNVESEIYG GDRTANFFLQ DILKRMILLC KAAVEAPWCV PCGGFCYGDG NLVFIANDWH
401: TALLPVYLKA YYRDNGFMIY ARSVLVIHNI AHQGRGPLDD FSYLDLPSNY MDLFKHHDPF GGDHLNIFAA GIKAADRLLT VSHGYAWELK TPEGGWGLHG
501: IINESDWKFQ GIVNGIDTTD WNPRRDVHLK LDGYSNYSLE TVETGKAQCK AALQKELGLP VRGDVPVIAF IGRLDNQKGV DLIAEAMPWI AGQDVQVILL
601: GTGRQDLEDT LRRLESQHYD RVRGWVGFSV RLAHRMTAGA DILLMPSRFE PCGLNQLYAM MYGTVPVVHA VGGLRDTVQH YNPYEEVGLG WTFENAEANR
701: MIDALGHCLN TYRNYKSSWE GLRRRGMMQD LSWDTAAKRY EEVLVAAKYQ W

Best Arabidopsis Sequence Match ( AT1G32900.1 )
(BLAST)

001: MATVTASSNF VSRTSLFNNH GASSCSDVAQ ITLKGQSLTH CGLRSFNMVD NLQRRSQAKP VSAKSSKRSS KVKTAGKIVC EKGMSVIFIG AEVGPWSKTG
101: GLGDVLGGLP PALAARGHRV MTICPRYDQY KDAWDTCVVV QIKVGDKVEN VRFFHCYKRG VDRVFVDHPI FLAKVVGKTG SKIYGPITGV DYNDNQLRFS
201: LLCQAALEAP QVLNLNSSKY FSGPYGEDVV FVANDWHTAL LPCYLKSMYQ SRGVYMNAKV VFCIHNIAYQ GRFAFDDYSL LNLPISFKSS FDFMDGYEKP
301: VKGRKINWMK AAILEAHRVL TVSPYYAQEL ISGVDRGVEL HKYLRMKTVS GIINGMDVQE WNPSTDKYID IKYDITTVTD AKPLIKEALQ AAVGLPVDRD
401: VPVIGFIGRL EEQKGSDILV EAISKFMGLN VQMVILGTGK KKMEAQILEL EEKFPGKAVG VAKFNVPLAH MITAGADFII VPSRFEPCGL IQLHAMRYGT
501: VPIVASTGGL VDTVKDGYTG FHIGRFNVKC EVVDPDDVIA TAKAVTRAVA VYGTSAMQEM VKNCMDQDFS WKGPARLWEK VLLSLNVAGS EAGTEGEEIA
601: PLAKENVATP

Arabidopsis Description

GBSS1Granule-bound starch synthase 1, chloroplastic/amyloplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9MAQ0]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.