Subcellular Localization
min:
: max
Winner_takes_all: peroxisome, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7D01G187600.1 | Wheat | cytosol | 97.31 | 90.5 |
| HORVU7Hr1G038130.1 | Barley | nucleus | 96.77 | 90.0 |
| Zm00001d037221_P001 | Maize | cytosol, nucleus, peroxisome | 75.54 | 74.14 |
| EER88112 | Sorghum | nucleus | 77.15 | 72.84 |
| Os06t0226700-01 | Rice | nucleus | 74.19 | 71.32 |
| TraesCS6B01G334900.1 | Wheat | nucleus | 73.12 | 67.66 |
| Zm00001d044836_P001 | Maize | nucleus | 64.78 | 67.51 |
| GSMUA_Achr4P00500_001 | Banana | nucleus | 42.2 | 57.72 |
| GSMUA_Achr7P20990_001 | Banana | nucleus | 39.78 | 55.22 |
| VIT_17s0000g06020.t01 | Wine grape | nucleus | 45.7 | 46.2 |
| CDY36943 | Canola | nucleus | 22.31 | 43.92 |
| Solyc03g116320.2.1 | Tomato | nucleus | 46.77 | 42.54 |
| PGSC0003DMT400001613 | Potato | nucleus | 47.04 | 42.27 |
| PGSC0003DMT400083148 | Potato | nucleus | 45.97 | 41.71 |
| Solyc06g070900.2.1 | Tomato | nucleus | 45.7 | 40.87 |
| KRH63357 | Soybean | nucleus | 42.2 | 39.45 |
| KRH56919 | Soybean | nucleus | 44.09 | 39.42 |
| KRH03466 | Soybean | nucleus | 43.28 | 38.98 |
| KRH54542 | Soybean | nucleus | 42.74 | 38.97 |
| CDY24170 | Canola | nucleus | 25.27 | 38.68 |
| TraesCS2B01G062900.1 | Wheat | plastid | 15.05 | 35.0 |
| TraesCS6B01G262600.1 | Wheat | plastid | 18.28 | 34.17 |
| AT3G47620.1 | Thale cress | nucleus | 44.62 | 33.95 |
| Bra018126.1-P | Field mustard | nucleus | 42.47 | 33.91 |
| TraesCS6B01G462100.1 | Wheat | mitochondrion | 17.47 | 32.83 |
| TraesCS5B01G117100.1 | Wheat | nucleus | 29.03 | 25.9 |
| TraesCS3B01G470700.1 | Wheat | nucleus | 23.92 | 25.5 |
| TraesCS2B01G392900.1 | Wheat | cytosol | 17.2 | 25.5 |
| TraesCS4B01G093700.1 | Wheat | nucleus, plastid | 25.81 | 25.2 |
| TraesCS5B01G310000.1 | Wheat | cytosol, nucleus, peroxisome | 21.77 | 23.89 |
| TraesCS5B01G516200.1 | Wheat | cytosol, nucleus, peroxisome | 21.24 | 22.64 |
Protein Annotations
| EnsemblPlants:TraesCS7B01G091900.1 | EnsemblPlantsGene:TraesCS7B01G091900 | InterPro:IPR017887 | InterPro:TF_TCP_subgr | InterPro:Transcription_factor_TCP | PANTHER:PTHR31072 |
| PANTHER:PTHR31072:SF74 | PFAM:PF03634 | PFscan:PS51369 | SEG:seg | MapMan:15.5.19 | : |
Description
No Description!
Coordinates
chr7B:+:105323184..105324302
Molecular Weight (calculated)
38496.2 Da
IEP (calculated)
10.035
GRAVY (calculated)
-0.433
Length
372 amino acids
Sequence
(BLAST)
(BLAST)
001: MDVTGDAGGG RRPNSPLQLL EKKEEHPCSI SPAAGLGTNG SATGELQVRK AAPPKRTTSK DRHTKVDGRG RRIRMPAICA ARVFQLTREL GHKTDGETIE
101: WLLQQAEPAV IAATGTGTIP ANFTSLNISL RSSGSMLSTI PAHLRAAGLP GSRFGGGARA DAWDRFVGLG FGGGLESPAS TTTSSSSPLL LSFHSGSVGL
201: DVSPSSATAA ANTELSRKRR WEQEMQQQRH QQQQQQQYQQ QMAGYTQSQM PGTVWMVPTS HAQGAGAAPA GGGESIWTFP QPGSGGGGSA TVYRGVPSGL
301: HFMNIPAPMA VHAQQLGLGQ AGGGGSAAAG EGHMGILAAL NAYRGQHASA LEVTVAGHNG AAEGTTHHQH QN
101: WLLQQAEPAV IAATGTGTIP ANFTSLNISL RSSGSMLSTI PAHLRAAGLP GSRFGGGARA DAWDRFVGLG FGGGLESPAS TTTSSSSPLL LSFHSGSVGL
201: DVSPSSATAA ANTELSRKRR WEQEMQQQRH QQQQQQQYQQ QMAGYTQSQM PGTVWMVPTS HAQGAGAAPA GGGESIWTFP QPGSGGGGSA TVYRGVPSGL
301: HFMNIPAPMA VHAQQLGLGQ AGGGGSAAAG EGHMGILAAL NAYRGQHASA LEVTVAGHNG AAEGTTHHQH QN
001: MDPDPDHNHR PNFPLQLLDS STSSSSTSLA IISTTSEPNS EPKKPPPKRT STKDRHTKVE GRGRRIRMPA MCAARVFQLT RELGHKSDGE TIEWLLQQAE
101: PAVIAATGTG TIPANFTSLN ISLRSSRSSL SAAHLRTTPS SYYFHSPHQS MTHHLQHQHQ VRPKNESHSS SSSSSQLLDH NQMGNYLVQS TAGSLPTSQS
201: PATAPFWSSG DNTQNLWAFN INPHHSGVVA GDVYNPNSGG SGGGSGVHLM NFAAPIALFS GQPLASGYGG GGGGGGEHSH YGVLAALNAA YRPVAETGNH
301: NNNQQNRDGD HHHNHQEDGS TSHHS
101: PAVIAATGTG TIPANFTSLN ISLRSSRSSL SAAHLRTTPS SYYFHSPHQS MTHHLQHQHQ VRPKNESHSS SSSSSQLLDH NQMGNYLVQS TAGSLPTSQS
201: PATAPFWSSG DNTQNLWAFN INPHHSGVVA GDVYNPNSGG SGGGSGVHLM NFAAPIALFS GQPLASGYGG GGGGGGEHSH YGVLAALNAA YRPVAETGNH
301: NNNQQNRDGD HHHNHQEDGS TSHHS
Arabidopsis Description
TCP15TCP15 [Source:UniProtKB/TrEMBL;Acc:A0A178WLV7]
SUBAcon: [plastid,nucleus]
SUBAcon: [plastid,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.